| Protein: | RTN4R |
| Organism: | Homo sapiens |
| Length: | 473 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RTN4R.
| Description | E-value | Query Range |
Subject Range |
|
|
3.0E-87 | [3..472] | [112..591] |
|
|
2.0E-81 | [3..469] | [110..586] |
|
Region A: Residues: [1-333] |
1 11 21 31 41 51
| | | | | |
1 MKRASAGGSR LLAWVLWLQA WQVAAPCPGA CVCYNEPKVT TSCPQQGLQA VPVGIPAASQ 60
61 RIFLHGNRIS HVPAASFRAC RNLTILWLHS NVLARIDAAA FTGLALLEQL DLSDNAQLRS 120
121 VDPATFHGLG RLHTLHLDRC GLQELGPGLF RGLAALQYLY LQDNALQALP DDTFRDLGNL 180
181 THLFLHGNRI SSVPERAFRG LHSLDRLLLH QNRVAHVHPH AFRDLGRLMT LYLFANNLSA 240
241 LPTEALAPLR ALQYLRLNDN PWVCDCRARP LWAWLQKFRG SSSEVPCSLP QRLAGRDLKR 300
301 LAANDLQGCA VATGPYHPIW TGRATDEEPL GLP
|
| Detection Method: |  |
| Confidence: | 42.0 |
| Match: | 1oznA |
| Description: | Reticulon 4 receptor (Nogo-66 receptor, Ngr) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| extracellular matrix structural constituent | 2.72113902188155 | bayes_pls_golite062009 |
| receptor activity | 1.88785535225324 | bayes_pls_golite062009 |
| binding | 1.87302803330255 | bayes_pls_golite062009 |
| signal transducer activity | 1.69338277273283 | bayes_pls_golite062009 |
| molecular transducer activity | 1.69338277273283 | bayes_pls_golite062009 |
| transmembrane receptor activity | 1.60129047457824 | bayes_pls_golite062009 |
| glycosaminoglycan binding | 1.28988458709664 | bayes_pls_golite062009 |
| extracellular matrix binding | 0.907118880836251 | bayes_pls_golite062009 |
| protein binding | 0.646159692466759 | bayes_pls_golite062009 |
| polysaccharide binding | 0.61188190229906 | bayes_pls_golite062009 |
| receptor binding | 0.525216740013984 | bayes_pls_golite062009 |
| G-protein coupled receptor activity | 0.39590205214035 | bayes_pls_golite062009 |
| pattern binding | 0.389630581129679 | bayes_pls_golite062009 |
| carbohydrate binding | 0.343717562511172 | bayes_pls_golite062009 |
| nucleic acid binding | 0.246718758617065 | bayes_pls_golite062009 |
| collagen binding | 0.085405748322021 | bayes_pls_golite062009 |
|
Region A: Residues: [334-473] |
1 11 21 31 41 51
| | | | | |
1 KCCQPDAADK ASVLEPGRPA SAGNALKGRV PPGDSPPGNG SGPRHINDSP FGTLPGSAEP 60
61 PLTAVRPEGS EPPGFPTSGP RRRPGCSRKN RTRSHCRLGQ AGSGGGGTGD SEGSGALPSL 120
121 TCSLTPLGLA LVLWTVLGPC
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
