| Protein: | RBS1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 488 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RBS1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..488] | [1..488] |
|
|
0.0 | [35..488] | [4..457] |
|
|
1.0E-79 | [21..269] | [130..406] |
|
|
5.0E-40 | [39..207] | [21..223] |
|
Region A: Residues: [1-120] |
1 11 21 31 41 51
| | | | | |
1 MRVSLSVSSF FHIQLDKFWR RQLSHIVPAS RGDTLDSRNW GLTPAMETGL FQKPQDRIFI 60
61 IELENSIVSF INSNTESFQL RPMNSYYRLL SHQIAEYHNL NHVLARTQDS CVILFKGENF 120
121
|
| Detection Method: |  |
| Confidence: | 12.638272 |
| Match: | PF01424 |
| Description: | R3H domain |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [121-225] |
1 11 21 31 41 51
| | | | | |
1 QKIEGKPLLQ ELQLNKKPEE CASSSESIEK SNNNRIFRIL KRKEVGNECD YKIDGNTRTP 60
61 NSNLTANSNK DQKIEIDDKS STDLEQERIE KERLYEQRKQ EIFDK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.218 | b.55.1 | PH domain-like |
| View | Download | 0.366 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.265 | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.288 | d.87.1 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |
| View | Download | 0.212 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.208 | g.44.1 | RING/U-box |
|
Region A: Residues: [226-488] |
1 11 21 31 41 51
| | | | | |
1 LNKSEDDVKS TNSSGSSDSD NEWSDWLNGD DSNTQTSNGS VSSSSPFNSS VTTIQVNKPQ 60
61 QQFYDSRRGR GGRRRGTNNY KDAYRGQSRR NKENGGYQSG YSSPYLVYPP PQMGGNSLPT 120
121 YPLMYNPAGP APGPAPSPMV MGNNTVFMNP YMYNMNPQGS CSFGTPIPMY PPYQYQYQYQ 180
181 YNTQYHSGPY SNTPSYNSNN YTRSSANKYH HFQGKNSYSG AIPKRSDDSN SNKNEGIRRA 240
241 SVEGSPSSRD TDSVEMKFDK LNI
|
| Detection Method: | |
| Confidence: | 9.91 |
| Match: | 1i3qA |
| Description: | RBP1 |
Matching Structure (courtesy of the PDB): |
|
