YRC Public Data Repository - Protein Structure Prediction

Protein:	YLR211C
Organism:	Saccharomyces cerevisiae
Length:	140 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR211C.

Description	E-value	Query Range	Subject Range
gi\|151941052 - gi\|151941052\|gb\|EDN59432.1\| conserved protein [Saccharomyces cerevisiae YJM789] ATG38_YEAST - Autophagy-related protein 38 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATG38 PE=1 ... YLR211C - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th... gi\|190405277 - gi\|190405277\|gb\|EDV08544.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]	252.0	[0..1]	[140..87]
gi\|49642061 - gi\|49642061\|emb\|CAH01779.1\| KLLA0C16291p [Kluyveromyces lactis] gi\|49642061, gi\|... - gi\|50305935\|ref\|XP_452928.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642061\|emb\|CAH0177...	82.0	[0..40]	[139..108]
gi\|50291323, gi\|... - gi\|50291323\|ref\|XP_448094.1\| unnamed protein product [Candida glabrata], gi\|49527405\|emb\|CAG61045.1\|... gi\|49527405 - gi\|49527405\|emb\|CAG61045.1\| unnamed protein product [Candida glabrata]	81.0	[0..4]	[139..87]
gi\|44982731 - gi\|44982731\|gb\|AAS51994.1\| ADR074Cp [Ashbya gossypii ATCC 10895] gi\|44982731, gi\|... - gi\|45187947\|ref\|NP_984170.1\| ADR074Cp [Ashbya gossypii ATCC 10895], gi\|44982731\|gb\|AAS51994.1\| ADR07...	76.0	[0..39]	[126..54]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNNNMLIGS VILNNKSPIN GISNARNWDN PAYQDTLSPI NDPLLMSILN RLQFNLNNDI  60
   61 QLKTEGGKNS KNSEMKINLR LEQFKKELVL YEQKKFKEYG MKIDEITKEN KKLANEIGRL 120
  121 RERWDSLVES AKQRRDKQKN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits