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View Structure Prediction Details

Protein: YLR211C
Organism: Saccharomyces cerevisiae
Length: 140 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR211C.

Description E-value Query
Range
Subject
Range
gi|151941052 - gi|151941052|gb|EDN59432.1| conserved protein [Saccharomyces cerevisiae YJM789]
ATG38_YEAST - Autophagy-related protein 38 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATG38 PE=1 ...
YLR211C - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th...
gi|190405277 - gi|190405277|gb|EDV08544.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
252.0 [0..1] [140..87]
gi|49642061 - gi|49642061|emb|CAH01779.1| KLLA0C16291p [Kluyveromyces lactis]
gi|49642061, gi|... - gi|50305935|ref|XP_452928.1| unnamed protein product [Kluyveromyces lactis], gi|49642061|emb|CAH0177...
82.0 [0..40] [139..108]
gi|50291323, gi|... - gi|50291323|ref|XP_448094.1| unnamed protein product [Candida glabrata], gi|49527405|emb|CAG61045.1|...
gi|49527405 - gi|49527405|emb|CAG61045.1| unnamed protein product [Candida glabrata]
81.0 [0..4] [139..87]
gi|44982731 - gi|44982731|gb|AAS51994.1| ADR074Cp [Ashbya gossypii ATCC 10895]
gi|44982731, gi|... - gi|45187947|ref|NP_984170.1| ADR074Cp [Ashbya gossypii ATCC 10895], gi|44982731|gb|AAS51994.1| ADR07...
76.0 [0..39] [126..54]

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Predicted Domain #1
Region A:
Residues: [1-140]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNNNMLIGS VILNNKSPIN GISNARNWDN PAYQDTLSPI NDPLLMSILN RLQFNLNNDI  60
   61 QLKTEGGKNS KNSEMKINLR LEQFKKELVL YEQKKFKEYG MKIDEITKEN KKLANEIGRL 120
  121 RERWDSLVES AKQRRDKQKN 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.680 a.48.1 N-terminal domain of cbl (N-cbl)
View Download 0.619 a.7.12 Description not found.
View Download 0.542 f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore
View Download 0.542 f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore
View Download 0.528 f.18.1 F1F0 ATP synthase subunit A
View Download 0.528 f.18.1 F1F0 ATP synthase subunit A
View Download 0.479 d.67.3 Ribosome recycling factor, RRF
View Download 0.438 a.25.1 Ferritin-like
View Download 0.428 d.67.3 Ribosome recycling factor, RRF
View Download 0.423 f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore
View Download 0.354 f.21.2 Fumarate reductase respiratory complex transmembrane subunits
View Download 0.342 f.31.1 Photosystem I reaction center subunit XI, PsaL
View Download 0.314 a.36.1 Signal peptide-binding domain
View Download 0.244 a.24.23 Description not found.
View Download 0.233 d.198.1 Type III secretory system chaperone


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle