YRC Public Data Repository - Protein Structure Prediction

Protein:	DID4
Organism:	Saccharomyces cerevisiae
Length:	151 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DID4.

Description	E-value	Query Range	Subject Range
DID4_YEAST - DOA4-independent degradation protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=D... DID4 - Class E Vps protein of the ESCRT-III complex, required for sorting of integral membrane proteins int...	2.0E-27	[1..151]	[82..232]
VPS2A_ARATH - Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=1 SV=2	2.0E-23	[1..149]	[80..224]
DID2_SCHPO - Vacuolar protein-sorting-associated protein 46 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843... did2 - vacuolar sorting protein Did2	3.0E-23	[1..148]	[46..177]
gi\|125532355 - gi\|125532355\|gb\|EAY78920.1\| hypothetical protein OsI_34021 [Oryza sativa Indica Group] gi\|37535360, gi\|... - gi\|37535360\|ref\|NP_921982.1\| hypothetical protein [Oryza sativa (japonica cultivar-group)], gi\|31432...	6.0E-23	[2..148]	[79..210]
vps-2 - status:Confirmed UniProt:Q9U2F6 protein_id:CAB60355.1	2.0E-21	[1..150]	[79..237]
gi\|220944304 - gi\|220944304\|gb\|ACL84695.1\| Chmp1-PA [synthetic construct] gi\|194124491, gi... - gi\|195352210\|ref\|XP_002042607.1\| GM14926 [Drosophila sechellia], gi\|194124491\|gb\|EDW46534.1\| GM14926... gi\|195591330, gi... - gi\|195591330\|ref\|XP_002085395.1\| GD12332 [Drosophila simulans], gi\|194197404\|gb\|EDX10980.1\| GD12332 ... Chmp1-PA, FBpp03... - The gene Chmp1 is referred to in FlyBase by the symbol Dmel\Chmp1 (CG4108, FBgn0036805). It is a pro... gi\|190654601, gi... - gi\|194871293\|ref\|XP_001972818.1\| GG15729 [Drosophila erecta], gi\|190654601\|gb\|EDV51844.1\| GG15729 [D...	1.0E-20	[1..148]	[70..200]

Back

Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAQLQAISL RIQAVRSSDQ MTRSMSEATG LLAGMNRTMN LPQLQRISME FEKQSDLMGQ  60
   61 RQEFMDEAID NVMGDEVDED EEADEIVNKV LDEIGVDLNS QLQSTPQNLV SNAPIAETAM 120
  121 GIPEPIGAGS EFHGNPDDDL QARLNTLKKQ T

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	68.30103
Match:	PF03357
Description:	ESCRT-III complex subunit

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits