| Protein: | VPS5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 675 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS5.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..675] | [1..675] |
|
|
2.0E-69 | [82..671] | [4..574] |
|
|
2.0E-69 | [46..675] | [216..837] |
|
|
4.0E-69 | [151..671] | [23..515] |
|
|
7.0E-68 | [151..671] | [23..514] |
|
|
7.0E-67 | [149..671] | [21..515] |
|
Region A: Residues: [1-198] |
1 11 21 31 41 51
| | | | | |
1 MDYEDNLEAP VWDELNHEGD KTQSLVSNSI ESIGQISTNE ERKDNELLET TASFADKIDL 60
61 DSAPEWKDPG LSVAGNPQLE EHDNSKADDL INSLAPEQDP IADLKNSTTQ FIATRESGGA 120
121 LFTGNANSPL VFDDTIYDAN TSPNTSKSIS GRRSGKPRIL FDSARAQRNS KRNHSLKAKR 180
181 TTASDDTIKT PFTDPLKK
|
| Detection Method: |  |
| Confidence: | 33.0 |
| Match: | 1bg2__ |
| Description: | Kinesin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [199-432] |
1 11 21 31 41 51
| | | | | |
1 AEKENEFVEE PLDDRNERRE NNEGKFTASV EKNILEQVDR PLYNLPQTGA NISSPAEVEE 60
61 NSEKFGKTKI GSKVPPTEKA VAFKVEVKDP VKVGELTSIH VEYTVISESS LLELKYAQVS 120
121 RRYRDFRWLY RQLQNNHWGK VIPPPPEKQS VGSFKENFIE NRRFQMESML KKICQDPVLQ 180
181 KDKDFLLFLT SDDFSSESKK RAFLTGSGAI NDSNDLSEVR ISEIQLLGAE DAAE
|
| Detection Method: | |
| Confidence: | 35.522879 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [433-675] |
1 11 21 31 41 51
| | | | | |
1 VLKNGGIDAE SHKGFMSISF SSLPKYNEAD EFFIEKKQKI DELEDNLKKL SKSLEMVDTS 60
61 RNTLAASTEE FSSMVETLAS LNVSEPNSEL LNNFADVHKS IKSSLERSSL QETLTMGVML 120
121 DDYIRSLASV KAIFNQRSKL GYFLVVIEND MNKKHSQLGK LGQNIHSEKF REMRKEFQTL 180
181 ERRYNLTKKQ WQAVGDKIKD EFQGFSTDKI REFRNGMEIS LEAAIESQKE CIELWETFYQ 240
241 TNL
|
| Detection Method: | |
| Confidence: | 35.522879 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [345-675] |
1 11 21 31 41 51
| | | | | |
1 EKQSVGSFKE NFIENRRFQM ESMLKKICQD PVLQKDKDFL LFLTSDDFSS ESKKRAFLTG 60
61 SGAINDSNDL SEVRISEIQL LGAEDAAEVL KNGGIDAESH KGFMSISFSS LPKYNEADEF 120
121 FIEKKQKIDE LEDNLKKLSK SLEMVDTSRN TLAASTEEFS SMVETLASLN VSEPNSELLN 180
181 NFADVHKSIK SSLERSSLQE TLTMGVMLDD YIRSLASVKA IFNQRSKLGY FLVVIENDMN 240
241 KKHSQLGKLG QNIHSEKFRE MRKEFQTLER RYNLTKKQWQ AVGDKIKDEF QGFSTDKIRE 300
301 FRNGMEISLE AAIESQKECI ELWETFYQTN L
|
| Detection Method: | |
| Confidence: | 41.0 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
| Matching Structure (courtesy of the PDB): |
|
