Protein: | APE3 |
Organism: | Saccharomyces cerevisiae |
Length: | 537 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APE3.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..537] | [28..564] |
|
0.0 | [1..537] | [1..537] |
|
3.0E-77 | [6..527] | [69..631] |
|
4.0E-72 | [8..527] | [74..638] |
|
7.0E-71 | [57..526] | [21..458] |
|
9.0E-71 | [8..523] | [74..633] |
|
1.0E-69 | [8..527] | [71..628] |
|
2.0E-63 | [76..510] | [33..444] |
|
2.0E-60 | [74..518] | [47..494] |
Region A: Residues: [1-56] |
1 11 21 31 41 51 | | | | | | 1 MHFSLKQLAV AAFYATNLGS AYVIPQFFQE AFQQEEPIEN YLPQLNDDDS SAVAAN |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.591 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
View | Download | 0.714 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
View | Download | 0.816 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
View | Download | 0.598 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
View | Download | 0.590 | a.5.2 | UBA-like |
View | Download | 0.525 | a.4.1 | Homeodomain-like |
View | Download | 0.422 | a.144.2 | Ribosomal protein L20 |
View | Download | 0.328 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
View | Download | 0.298 | d.45.1 | ClpS-like |
View | Download | 0.297 | a.161.1 | beta-catenin-interacting protein ICAT |
View | Download | 0.286 | a.60.1 | SAM/Pointed domain |
View | Download | 0.279 | a.5.3 | N-terminal domain of phosphatidylinositol transfer protein sec14p |
View | Download | 0.264 | a.50.1 | Anaphylotoxins (complement system) |
View | Download | 0.264 | a.135.1 | Tetraspanin |
View | Download | 0.251 | a.5.6 | Hypothetical protein MTH1615 |
View | Download | 0.243 | d.47.1 | Ribosomal protein L11, N-terminal domain |
View | Download | 0.242 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
View | Download | 0.231 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
View | Download | 0.229 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
View | Download | 0.214 | g.1.1 | Insulin-like |
View | Download | 0.212 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
View | Download | 0.208 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
Region A: Residues: [57-138] |
1 11 21 31 41 51 | | | | | | 1 IPKPHIPYFM KPHVESEKLQ DKIKVDDLNA TAWDLYRLAN YSTPDYGHPT RVIGSKGHNK 60 61 TMEYILNVFD DMQDYYDVSL QE |
Detection Method: | |
Confidence: | 12.05 |
Match: | 1de4C |
Description: | Transferrin receptor ectodomain, C-terminal domain; Transferrin receptor ectodomain, apical domain; Transferrin receptor ectodomain, protease-like domain |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [139-224] |
1 11 21 31 41 51 | | | | | | 1 FEALSGKIIS FNLSDAETGK SFANTTAFAL SPPVDGFVGK LVEIPNLGCE EKDYASVVPP 60 61 RHNEKQIALI ERGKCPFGDK SNLAGK |
Detection Method: | |
Confidence: | 12.05 |
Match: | 1de4C |
Description: | Transferrin receptor ectodomain, C-terminal domain; Transferrin receptor ectodomain, apical domain; Transferrin receptor ectodomain, protease-like domain |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [225-537] |
1 11 21 31 41 51 | | | | | | 1 FGFTAVVIYD NEPKSKEGLH GTLGEPTKHT VATVGVPYKV GKKLIANIAL NIDYSLYFAM 60 61 DSYVEFIKTQ NIIADTKHGD PDNIVALGAH SDSVEEGPGI NDDGSGTISL LNVAKQLTHF 120 121 KINNKVRFAW WAAEEEGLLG SNFYAYNLTK EENSKIRVFM DYDMMASPNY EYEIYDANNK 180 181 ENPKGSEELK NLYVDYYKAH HLNYTLVPFD GRSDYVGFIN NGIPAGGIAT GAEKNNVNNG 240 241 KVLDRCYHQL CDDVSNLSWD AFITNTKLIA HSVATYADSF EGFPKRETQK HKEVDILNAQ 300 301 QPQFKYRADF LII |
Detection Method: | |
Confidence: | 379.218487 |
Match: | 1cp7A_ |
Description: | Aminopeptidase |
Matching Structure (courtesy of the PDB): |