YRC Public Data Repository - Protein Structure Prediction

Protein:	STB1
Organism:	Saccharomyces cerevisiae
Length:	420 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STB1.

Description	E-value	Query Range	Subject Range
gi\|151944240 - gi\|151944240\|gb\|EDN62519.1\| Sin3p binding protein [Saccharomyces cerevisiae YJM789] STB1 - Protein with a role in regulation of MBF-specific transcription at Start, phosphorylated by Cln-Cdc2... STB1_YEAST - Protein STB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STB1 PE=1 SV=2	0.0	[1..420]	[1..420]
gi\|44982462 - gi\|44982462\|gb\|AAS51748.1\| ADL172Wp [Ashbya gossypii ATCC 10895] gi\|44982462, gi\|... - gi\|45187701\|ref\|NP_983924.1\| ADL172Wp [Ashbya gossypii ATCC 10895], gi\|44982462\|gb\|AAS51748.1\| ADL17...	0.0	[1..354]	[5..352]

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Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQPQMSPEK EQELASKILH RAELAQMTRQ LKLGLSNVPS TKRKQDSTTK KRSGEDAEDV  60
   61 DEDHKTLLEA ISPAKKPLHD DTNKMTVISP VKFVEKPNTP PSSRQRKAED RSQQIKPRKE 120
  121 DTPSTPRASA TPIILPHASS HYQRPHDKNF MTPKRNNNNS SNHSNNNNNI KKKAAGSKDA 180
  181 PQDSDNTAGA DLLMYLATSP YNKSSHHGTP MAVRMPTTPR SYHYASQLSL NG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [233-420]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTASTSNDAV RFSHIKPSAS SPQSTFKSNL LPNFPDESLM DSPSLYLSNN NGSVQATLSP  60
   61 QQRRKPTTNT LHPPSNVPTT PSRELNGTNF NLLRTPNFNM GDYLHNLFSP SPRVPAQQGA 120
  121 SNTSASIPSV PAMVPGSSSN TSAIATAAIS SHTTNNFLDM NANGIPLIVG PGTDRIGEGE 180
  181 SIDDKLTD