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View Structure Prediction Details

Protein: PBA1
Organism: Saccharomyces cerevisiae
Length: 276 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PBA1.

Description E-value Query
Range
Subject
Range
gi|207342969 - gi|207342969|gb|EDZ70576.1| YLR199Cp-like protein [Saccharomyces cerevisiae AWRI1631]
PBA1 - Protein involved in 20S proteasome assembly; forms a heterodimer with Add66p that binds to proteasom...
420.0 [0..57] [276..1]

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Predicted Domain #1
Region A:
Residues: [1-85]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFKQWNDLP EPKHLLDLPE ISKNLQSLEV CPVPKVEFPQ DLDVPQYSTA VITTKIMNPL  60
   61 FPKNLLQLTS IGEIKTTLTV KSPSL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [86-276]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQSSGKHSWN YDENFPNEVD PDQKNDTADE TVYGFSFPIY SFGKTLLFSM EENFISISPI  60
   61 FGNMISRSII SQLAQFSPDI IVIGTSDKIA SMKVMTENEC TLQPPEFITG FIGSVLTQLI 120
  121 VGPSKGLKFK CLVAPSEGPN GFEKLSLSDM GSLVDLCGQW LGFEPSRYSE ECYRLWRCDS 180
  181 AAIGAQSGLY I

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle