YRC Public Data Repository - Protein Structure Prediction

Protein:	MND1
Organism:	Saccharomyces cerevisiae
Length:	219 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MND1.

Description	E-value	Query Range	Subject Range
gi\|45185632, gi\|... - gi\|45185632\|ref\|NP_983348.1\| ACL056Cp [Ashbya gossypii ATCC 10895], gi\|44981350\|gb\|AAS51172.1\| ACL05... gi\|44981350 - gi\|44981350\|gb\|AAS51172.1\| ACL056Cp [Ashbya gossypii ATCC 10895]	2.0E-60	[1..219]	[1..220]
MND1_YEAST - Meiotic nuclear division protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MND1 ... MND1 - Protein required for recombination and meiotic nuclear division; forms a complex with Hop2p, which i...	6.0E-59	[1..219]	[1..219]
MND1_MOUSE - Meiotic nuclear division protein 1 homolog OS=Mus musculus GN=Mnd1 PE=1 SV=1	5.0E-58	[4..216]	[3..204]
gi\|123982216, gi... - gi\|123997001\|gb\|ABM86102.1\| meiotic nuclear divisions 1 homolog (S. cerevisiae) [synthetic construct... gi\|114596457 - gi\|114596457\|ref\|XP_517488.2\| PREDICTED: GAJ protein [Pan troglodytes] MND1 - meiotic nuclear divisions 1 homolog (S. cerevisiae)	8.0E-58	[4..216]	[3..204]
MND1_ARATH - Meiotic nuclear division protein 1 homolog OS=Arabidopsis thaliana GN=MND1 PE=1 SV=1	2.0E-53	[4..217]	[3..207]
gi\|29841076 - gi\|29841076\|gb\|AAP06089.1\| similar to GenBank Accession Number AY028916 GAJ in Homo sapiens [Schisto...	3.0E-52	[12..216]	[2..195]
MCP7_SCHPO - Meiotic coiled-coil protein 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mcp7 PE=1 SV... mcp7 - meiosis specific coiled-coil protein Mcp7	9.0E-48	[1..217]	[1..206]
GL50803_6626, AA... - \| organism=Giardia_Assemblage_A_isolate_WB \| location=GLCHR05:2574802-2575410(-) \| length=203 \| sequ... gi\|33667824 - gi\|33667824\|gb\|AAQ24512.1\| Mnd1 [Giardia intestinalis] gi\|159117528, gi... - gi\|71072040\|ref\|XP_768579.1\| hypothetical protein GLP_76_12374_11763 [Giardia lamblia ATCC 50803], g...	1.0E-45	[1..217]	[1..203]
gi\|19069413, gi\|... - gi\|19074771\|ref\|NP_586277.1\| similarity to HYPOTHETICAL PROTEIN YA53_SCHPO [Encephalitozoon cuniculi... gi\|19074771 - gi\|19074771\|ref\|NP_586277.1\| similarity to HYPOTHETICAL PROTEIN YA53_SCHPO [Encephalitozoon cuniculi...	5.0E-41	[11..217]	[9..203]

Back

Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPKRQTVSL QEKKNRILNF FQETYTFYNI KELEKSIPKK CGISPMIVKD LVQQMIDEDG  60
   61 VISVEKCGNI NIYWCFKNQT LQKLYDSSEL IKKKIQEVKC DIATYKQELD KTLATGRRKK 120
  121 FTVGQKSYNR EALLEKRKKI QDEIKKKSNS LQKIESIRWD AAKIQENKQQ IRLKKVHLEK 180
  181 TTDNIEILID YLYKKFFLKP EQIRKEFGIP EEFKEFTEV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits