YRC Public Data Repository - Protein Structure Prediction

Protein:	SGE1
Organism:	Saccharomyces cerevisiae
Length:	543 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SGE1.

Description	E-value	Query Range	Subject Range
gi\|60467752, gi\|... - gi\|60467752\|gb\|EAL65769.1\| hypothetical protein DDB0191430 [Dictyostelium discoideum], gi\|29500764\|g... gi\|60467752, gi\|... - gi\|66810832\|ref\|XP_639123.1\| major facilitator superfamily transporter [Dictyostelium discoideum AX4...	0.0	[3..538]	[596..1095]
gi\|21225257, gi\|... - gi\|7649556\|emb\|CAB89031.1\| putative membrane transport protein. [Streptomyces coelicolor A3(2)], gi\|...	0.0	[4..539]	[28..523]
gi\|29832374, gi\|... - gi\|29832374\|ref\|NP_827008.1\| multidrug-efflux transporter [Streptomyces avermitilis MA-4680], gi\|296...	5.0E-98	[6..540]	[32..523]
gi\|32406262, gi\|... - gi\|32406262\|ref\|XP_323744.1\| hypothetical protein [Neurospora crassa], gi\|28918560\|gb\|EAA28232.1\| hy... gi\|85085267 - gi\|85085267\|ref\|XP_957468.1\| hypothetical protein [Neurospora crassa OR74A]	4.0E-96	[3..536]	[63..557]
gi\|19386936 - gi\|19386936\|gb\|AAL87047.1\|AF448056_3 putative dothistromin transporter [Mycosphaerella pini] gi\|19386936 - gi\|19386936\|gb\|AAL87047.1\|AF448056_3 putative dothistromin transporter [Mycosphaerella pini]	7.0E-93	[9..543]	[60..574]
VBA5_YEAST - Vacuolar basic amino acid transporter 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=... VBA5 - Putative transporter of the Major Facilitator Superfamily (MFS); proposed role as a basic amino acid...	7.0E-92	[4..542]	[33..573]

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Predicted Domain #1

Region A:
Residues: [1-428]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSTLSLTLC VISLLLTLFL AALDIVIVVT LYDTIGIKFH DFGNIGWLVT GYALSNAVFM  60
   61 LLWGRLAEIL GTKECLMISV IVFEIGSLIS ALSNSMATLI SGRVVAGFGG SGIESLAFVV 120
  121 GTSIVRENHR GIMITALAIS YVIAEGVGPF IGGAFNEHLS WRWCFYINLP IGAFAFIILA 180
  181 FCNTSGEPHQ KMWLPSKIKK IMNYDYGELL KASFWKNTFE VLVFKLDMVG IILSSAGFTL 240
  241 LMLGLSFGGN NFPWNSGIII CFFTVGPILL LLFCAYDFHF LSLSGLHYDN KRIKPLLTWN 300
  301 IASNCGIFTS SITGFLSCFA YELQSAYLVQ LYQLVFKKKP TLASIHLWEL SIPAMIATMA 360
  361 IAYLNSKYGI IKPAIVFGVL CGIVGSGLFT LINGELSQSI GYSILPGIAF GSIFQATLLS 420
  421 SQVQITSD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	3.19382
Match:	PF00083
Description:	Sugar (and other) transporter

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [429-543]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPDFQNKFIE VTAFNSFAKS LGFAFGGNMG AMIFTASLKN QMRSSQLNIP QFTSVETLLA  60
   61 YSTEHYDGPQ SSLSKFINTA IHDVFYCALG CYALSFFFGI FTSSKKTTIS AKKQQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits