| Protein: | HDA3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 655 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HDA3.
| Description | E-value | Query Range |
Subject Range |
|
|
3.0E-64 | [10..654] | [207..844] |
|
|
6.0E-64 | [33..654] | [1276..1890] |
|
|
8.0E-64 | [33..654] | [1277..1891] |
|
|
9.0E-64 | [33..655] | [292..907] |
|
|
9.0E-64 | [33..655] | [1281..1896] |
|
|
9.0E-64 | [10..654] | [1254..1891] |
|
|
1.0E-63 | [10..654] | [1253..1890] |
|
Region A: Residues: [1-241] |
1 11 21 31 41 51
| | | | | |
1 MDLLRILDTK PIPTIVDATT LGISGNTSGD YWLPTTMSLY QKELTDQIVS LHYSDILRYF 60
61 ETSHYKEDVI LESMKTMCLN GSLVATHPYL LIDHYMPKSL ITRDVPAHLA ENSGKFSVLR 120
121 DLINLVQEYE TETAIVCRPG RTMDLLEALL LGNKVHIKRY DGHSIKSKQK ANDFSCTVHL 180
181 FSSEGINFTK YPIKSKARFD MLICLDTTVD TSQKDIQYLL QYKRERKGLE RYAPIVRLVA 240
241 I
|
| Detection Method: |  |
| Confidence: | 30.0 |
| Match: | 2mysA_ |
| Description: | Myosin S1 fragment, N-terminal domain; Myosin S1, motor domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [242-362] |
1 11 21 31 41 51
| | | | | |
1 NSIDHCRLFF GKKFDKNSRE YLENVTAAMV ILRDRLGTLP PDLRPIYSQK LHYLVEWLEN 60
61 PTVPWPLPDI YPLKQYTSMD VERSLLTEVH FKKSDDQLED AFSNCSKKRG RHGANKAASS 120
121 T
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [363-426] |
1 11 21 31 41 51
| | | | | |
1 VAGIEDNITP SFYSTKRLKN DYYTNPLKQD MTQLTGITTA DNSSNVNYHL SSGIITHKLI 60
61 QSMG
|
| Detection Method: | |
| Confidence: | 7.221849 |
| Match: | 1c1gA_ |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [427-655] |
1 11 21 31 41 51
| | | | | |
1 EVYMDICVQK QELDDYSCLD DLQNDHLKFF SNEDEKIIKE YETVLRTNNE NLNRSHELEV 60
61 ENNLKFSQIE TLEKDIETLK GSLMAQGETL SKLKDAFVKT DNVQDEIEKE ERVSVSRDTE 120
121 KKYMEQEIKR AVDAIRENEE ETHKLNEKQN GLESELKLKF EKSEISTKEL NEKIGFLKKE 180
181 LKLENDLNEE LVGQLSKTMD NLENLTIPRV RTQNGNTKKK SRAKKPGNV
|
| Detection Method: | |
| Confidence: | 7.221849 |
| Match: | 1c1gA_ |
| Description: | Tropomyosin |
| Matching Structure (courtesy of the PDB): |
|
