| Protein: | HDA3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 655 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HDA3.
| Description | E-value | Query Range |
Subject Range |
|
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3.0E-64 | [10..654] | [207..844] |
|
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6.0E-64 | [33..654] | [1276..1890] |
|
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8.0E-64 | [33..654] | [1277..1891] |
|
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9.0E-64 | [33..655] | [292..907] |
|
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9.0E-64 | [33..655] | [1281..1896] |
|
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9.0E-64 | [10..654] | [1254..1891] |
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1.0E-63 | [10..654] | [1253..1890] |
|
Region A: Residues: [1-241] |
1 11 21 31 41 51
| | | | | |
1 MDLLRILDTK PIPTIVDATT LGISGNTSGD YWLPTTMSLY QKELTDQIVS LHYSDILRYF 60
61 ETSHYKEDVI LESMKTMCLN GSLVATHPYL LIDHYMPKSL ITRDVPAHLA ENSGKFSVLR 120
121 DLINLVQEYE TETAIVCRPG RTMDLLEALL LGNKVHIKRY DGHSIKSKQK ANDFSCTVHL 180
181 FSSEGINFTK YPIKSKARFD MLICLDTTVD TSQKDIQYLL QYKRERKGLE RYAPIVRLVA 240
241 I
|
| Detection Method: |  |
| Confidence: | 30.0 |
| Match: | 2mysA_ |
| Description: | Myosin S1 fragment, N-terminal domain; Myosin S1, motor domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [242-362] |
1 11 21 31 41 51
| | | | | |
1 NSIDHCRLFF GKKFDKNSRE YLENVTAAMV ILRDRLGTLP PDLRPIYSQK LHYLVEWLEN 60
61 PTVPWPLPDI YPLKQYTSMD VERSLLTEVH FKKSDDQLED AFSNCSKKRG RHGANKAASS 120
121 T
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.410 | d.95.2 | Homing endonucleases |
| View | Download | 0.415 | a.66.1 | Transducin (alpha subunit), insertion domain |
| View | Download | 0.372 | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.415 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.566 | d.52.2 | GMP synthetase C-terminal dimerisation domain |
| View | Download | 0.318 | a.185.1 | Gametocyte protein Pfg27 |
| View | Download | 0.297 | a.74.1 | Cyclin-like |
| View | Download | 0.280 | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.274 | c.110.1 | D-Tyr tRNAtyr deacylase, DTD |
| View | Download | 0.272 | a.24.4 | Hemerythrin |
| View | Download | 0.261 | a.1.1 | Globin-like |
| View | Download | 0.260 | a.47.2 | t-snare proteins |
| View | Download | 0.255 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.246 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.236 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.230 | d.96.1 | Tetrahydrobiopterin biosynthesis enzymes-like |
| View | Download | 0.228 | a.26.1 | 4-helical cytokines |
| View | Download | 0.225 | c.47.1 | Thioredoxin-like |
| View | Download | 0.217 | a.118.9 | ENTH/VHS domain |
| View | Download | 0.216 | a.19.1 | Fertilization protein |
| View | Download | 0.213 | a.2.3 | Chaperone J-domain |
| View | Download | 0.211 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.210 | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| View | Download | 0.208 | a.75.1 | Ribosomal protein S7 |
| View | Download | 0.207 | a.142.1 | PTS-regulatory domain, PRD |
| View | Download | 0.205 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.204 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.202 | a.60.10 | Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain |
| View | Download | 0.201 | d.110.2 | GAF domain-like |
|
Region A: Residues: [363-426] |
1 11 21 31 41 51
| | | | | |
1 VAGIEDNITP SFYSTKRLKN DYYTNPLKQD MTQLTGITTA DNSSNVNYHL SSGIITHKLI 60
61 QSMG
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| Detection Method: | |
| Confidence: | 7.221849 |
| Match: | 1c1gA_ |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [427-655] |
1 11 21 31 41 51
| | | | | |
1 EVYMDICVQK QELDDYSCLD DLQNDHLKFF SNEDEKIIKE YETVLRTNNE NLNRSHELEV 60
61 ENNLKFSQIE TLEKDIETLK GSLMAQGETL SKLKDAFVKT DNVQDEIEKE ERVSVSRDTE 120
121 KKYMEQEIKR AVDAIRENEE ETHKLNEKQN GLESELKLKF EKSEISTKEL NEKIGFLKKE 180
181 LKLENDLNEE LVGQLSKTMD NLENLTIPRV RTQNGNTKKK SRAKKPGNV
|
| Detection Method: | |
| Confidence: | 7.221849 |
| Match: | 1c1gA_ |
| Description: | Tropomyosin |
| Matching Structure (courtesy of the PDB): |
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