YRC Public Data Repository - Protein Structure Prediction

Protein:	YPR172W
Organism:	Saccharomyces cerevisiae
Length:	200 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPR172W.

Description	E-value	Query Range	Subject Range
PDXH_YEAST - Pyridoxamine 5'-phosphate oxidase homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G... YPR172W - Protein of unknown function, transcriptionally activated by Yrm1p along with genes involved in multi...	4.0E-72	[1..200]	[1..200]
gi\|2598190, gi\|2... - gi\|2598190\|gb\|AAB84003.1\| unknown [Cochliobolus heterostrophus], gi\|2583216\|gb\|AAB82944.1\| unknown [...	1.0E-65	[21..191]	[4..202]
gi\|85074725 - gi\|85074725\|ref\|XP_965730.1\| hypothetical protein NCU00590 [Neurospora crassa OR74A] gi\|32408577, gi\|... - gi\|38567317\|emb\|CAE76605.1\| conserved hypothetical protein [Neurospora crassa], gi\|32408577\|ref\|XP_3...	4.0E-60	[1..190]	[18..236]
gi\|4928176 - gi\|4928176\|gb\|AAD33446.1\|AF129745_1 unknown [Cochliobolus cymbopogonis]	3.0E-58	[37..191]	[1..179]
gi\|34328637 - gi\|34328637\|gb\|AAO31739.1\| unknown [Phaeosphaeria nodorum]	9.0E-57	[37..192]	[1..185]
SPAC1952.08c - pyridoxamine 5'-phosphate oxidase PDXH_SCHPO - Pyridoxamine 5'-phosphate oxidase C1952.08c homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	4.0E-56	[6..193]	[10..178]
gi\|30171180 - gi\|30171180\|gb\|AAO37756.1\| unknown [Leptosphaeria maculans]	1.0E-55	[37..191]	[1..185]
gi\|4928179 - gi\|4928179\|gb\|AAD33448.1\|AF129746_1 unknown [Cochliobolus ellisii]	2.0E-55	[56..191]	[1..165]

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Predicted Domain #1

Region A:
Residues: [1-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWTSTLPAH LLNLIKNSKY VHVATCSKDC IPSVALMNYI YVPGEKLFGQ TDNKNDYIIF  60
   61 VSPQDTQKFY NIKENPKVAL LFHDWIIANN LSVGKESISG TPTPTSIPHE EQRQSELLNL 120
  121 LQELNQAELN QMSASIGGET EIVNPESEES KYYKDLILKA NPDAKAFIFE KNTAVVKVRI 180
  181 DNARVSNNEN RTMFLSKGKS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [108-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PHEEQRQSEL LNLLQELNQA ELNQMSASIG GETEIVNPES EESKYYKDLI LKANPDAKAF  60
   61 IFEKNTAVVK VRIDNARVSN NENRTMFLSK GKS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.26
Match:	1xhnA
Description:	The crystal structure of Cellular Repressor of E1A-stimulated Genes (CREG)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits