YRC Public Data Repository - Protein Structure Prediction

Protein:	YPR172W
Organism:	Saccharomyces cerevisiae
Length:	200 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPR172W.

Description	E-value	Query Range	Subject Range
PDXH_YEAST - Pyridoxamine 5'-phosphate oxidase homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G... YPR172W - Protein of unknown function, transcriptionally activated by Yrm1p along with genes involved in multi...	4.0E-72	[1..200]	[1..200]
gi\|2598190, gi\|2... - gi\|2598190\|gb\|AAB84003.1\| unknown [Cochliobolus heterostrophus], gi\|2583216\|gb\|AAB82944.1\| unknown [...	1.0E-65	[21..191]	[4..202]
gi\|85074725 - gi\|85074725\|ref\|XP_965730.1\| hypothetical protein NCU00590 [Neurospora crassa OR74A] gi\|32408577, gi\|... - gi\|38567317\|emb\|CAE76605.1\| conserved hypothetical protein [Neurospora crassa], gi\|32408577\|ref\|XP_3...	4.0E-60	[1..190]	[18..236]
gi\|4928176 - gi\|4928176\|gb\|AAD33446.1\|AF129745_1 unknown [Cochliobolus cymbopogonis]	3.0E-58	[37..191]	[1..179]
gi\|34328637 - gi\|34328637\|gb\|AAO31739.1\| unknown [Phaeosphaeria nodorum]	9.0E-57	[37..192]	[1..185]
SPAC1952.08c - pyridoxamine 5'-phosphate oxidase PDXH_SCHPO - Pyridoxamine 5'-phosphate oxidase C1952.08c homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	4.0E-56	[6..193]	[10..178]
gi\|30171180 - gi\|30171180\|gb\|AAO37756.1\| unknown [Leptosphaeria maculans]	1.0E-55	[37..191]	[1..185]
gi\|4928179 - gi\|4928179\|gb\|AAD33448.1\|AF129746_1 unknown [Cochliobolus ellisii]	2.0E-55	[56..191]	[1..165]

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Predicted Domain #1

Region A:
Residues: [1-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWTSTLPAH LLNLIKNSKY VHVATCSKDC IPSVALMNYI YVPGEKLFGQ TDNKNDYIIF  60
   61 VSPQDTQKFY NIKENPKVAL LFHDWIIANN LSVGKESISG TPTPTSIPHE EQRQSELLNL 120
  121 LQELNQAELN QMSASIGGET EIVNPESEES KYYKDLILKA NPDAKAFIFE KNTAVVKVRI 180
  181 DNARVSNNEN RTMFLSKGKS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [108-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PHEEQRQSEL LNLLQELNQA ELNQMSASIG GETEIVNPES EESKYYKDLI LKANPDAKAF  60
   61 IFEKNTAVVK VRIDNARVSN NENRTMFLSK GKS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.26
Match:	1xhnA
Description:	The crystal structure of Cellular Repressor of E1A-stimulated Genes (CREG)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits