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View Structure Prediction Details

Protein: MMS1
Organism: Saccharomyces cerevisiae
Length: 1407 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MMS1.

Description E-value Query
Range
Subject
Range
MMS1_YEAST - E3 ubiquitin-protein ligase linker protein MMS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...
MMS1 - Subunit of an E3 ubiquitin ligase complex involved in resolving replication intermediates or prevent...
0.0 [1..1407] [1..1407]

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Predicted Domain #1
Region A:
Residues: [1-1407]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGLRTHGLD RYEHYIRRPS DFGKLELQDW LNHKSFRVSP NLLIDSSTTR EWNEPELFYQ  60
   61 NTEDETWVRP CVGPKLEPSM MMLRYHDSNI GQMPQFCYPI SSPINFKPVL KYILQERSEL 120
  121 SDGFPQKYNT LIGSLFDIDK NPETLDDSDI EALDDIEMSS DSGNVKEPKI ELQALEEIQQ 180
  181 KHFSLIVSNN GIFQTGSTSI TYIQSGISGS IAIKPNNVAI LILLTQPSGH LLSILPLDDG 240
  241 KETYLLQYWN LGQKGQWNII KHQNEKQFVL IHKELGICKF FEFHLPFTFQ LVNNLTLTDS 300
  301 VIMNGSFFPT NYTDLDPYFI IFITAIRYER IVYFVIEWNN NEIKKKEVYQ LTVFDGEKTN 360
  361 MTIPIGLNAC LVETPLKFSL VSANQIMSGE TEFHSFQLKA LKGIKSFFPA PLLLLKLQEL 420
  421 HPHTFKKFQY CTIISSSTGN ICFCVTERST IVNGNLKFYE LTRFKGLKSI SPLPSNPINL 480
  481 DSRSSSYVLV VISFSRTLEL TLSLEDLRCL DKKDVIKPLK NITFKHTIDS STEENSQILA 540
  541 FTSSKFYNTH TGSNINDTRN SQVWLTSPNA ITQPCIDYKL RKTHQLIHLK QFQIFRHLRI 600
  601 WKCKNLDIAL LQRLGINQSN TESSLIFATD AVSNNRIFLL DLTMTTTIDN DDPVQGLINI 660
  661 EDLLCDTENE TILLNFTKNN LIQVTRDTIY IDPIGGDKEL RKISPGWEFE NVTYNDGILI 720
  721 VWNAGLGCVS YIENIDAVDE SGALVSNLSS SKGMSKFFKQ LGTVTSVNFQ IKESTDDPTK 780
  781 YDIWILLPDC VIRTPFSDWI SDSLDFSDVY ILSVQQALIN GPYFCSLDYE SYFEVHTLQN 840
  841 NCFKKGSRCT SRVNFQGKDI KFRSFGVNQC LAFSAFEIFV INLTPIHDSR ELDFYKLKLP 900
  901 HLGNNNSILE VCPDIENNQL FILYSDGLRI LELSYLTSNN GNFLLKSTRS KNKKFLYLDK 960
  961 INRMLVLNQD LREWECIRLS DGKAVGLDSQ LLKDDSEEIL EIKELPIATE DNPLEKKTVL1020
 1021 LISFTSSLKL VLLTAAKNKI SNQIIDSYKL DNSRLLNHLV ITPRGEIFFL DYKVMGTDNE1080
 1081 MSFNKLKVTK HCIDQEERNN TTLRLTLETR FTFKSWSTVK TFTVVGDNII ATTNMGEKLY1140
 1141 LIKDFSSSSD ESRRVYPLEM YPDSKVQKII PLNECCFVVA AYCGNRNDLD SRLIFYSLPT1200
 1201 IKVGLNNETG SLPDEYGNGR VDDIFEVDFP EGFQFGTMAL YDVLHGERHV NRYSEGIRSE1260
 1261 NDEAEVALRQ RRNLLLFWRN HSSTPKPSLR RAATIVYEDH VSSRYFEDIS SILGSTAMRT1320
 1321 KRLSPYNAVA LDKPIQDISY DPAVQTLYVL MADQTIHKFG KDRLPCQDEY EPRWNSGYLV1380
 1381 SRRSIVKSDL ICEVGLWNLS DNCKNTV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [140-252]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNPETLDDSD IEALDDIEMS SDSGNVKEPK IELQALEEIQ QKHFSLIVSN NGIFQTGSTS  60
   61 ITYIQSGISG SIAIKPNNVA ILILLTQPSG HLLSILPLDD GKETYLLQYW NLG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [253-480]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKGQWNIIKH QNEKQFVLIH KELGICKFFE FHLPFTFQLV NNLTLTDSVI MNGSFFPTNY  60
   61 TDLDPYFIIF ITAIRYERIV YFVIEWNNNE IKKKEVYQLT VFDGEKTNMT IPIGLNACLV 120
  121 ETPLKFSLVS ANQIMSGETE FHSFQLKALK GIKSFFPAPL LLLKLQELHP HTFKKFQYCT 180
  181 IISSSTGNIC FCVTERSTIV NGNLKFYELT RFKGLKSISP LPSNPINL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [481-551]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSRSSSYVLV VISFSRTLEL TLSLEDLRCL DKKDVIKPLK NITFKHTIDS STEENSQILA  60
   61 FTSSKFYNTH T

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [552-705]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSNINDTRNS QVWLTSPNAI TQPCIDYKLR KTHQLIHLKQ FQIFRHLRIW KCKNLDIALL  60
   61 QRLGINQSNT ESSLIFATDA VSNNRIFLLD LTMTTTIDND DPVQGLINIE DLLCDTENET 120
  121 ILLNFTKNNL IQVTRDTIYI DPIGGDKELR KISP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [706-857]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GWEFENVTYN DGILIVWNAG LGCVSYIENI DAVDESGALV SNLSSSKGMS KFFKQLGTVT  60
   61 SVNFQIKEST DDPTKYDIWI LLPDCVIRTP FSDWISDSLD FSDVYILSVQ QALINGPYFC 120
  121 SLDYESYFEV HTLQNNCFKK GSRCTSRVNF QG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [858-1061]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDIKFRSFGV NQCLAFSAFE IFVINLTPIH DSRELDFYKL KLPHLGNNNS ILEVCPDIEN  60
   61 NQLFILYSDG LRILELSYLT SNNGNFLLKS TRSKNKKFLY LDKINRMLVL NQDLREWECI 120
  121 RLSDGKAVGL DSQLLKDDSE EILEIKELPI ATEDNPLEKK TVLLISFTSS LKLVLLTAAK 180
  181 NKISNQIIDS YKLDNSRLLN HLVI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [1062-1210]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPRGEIFFLD YKVMGTDNEM SFNKLKVTKH CIDQEERNNT TLRLTLETRF TFKSWSTVKT  60
   61 FTVVGDNIIA TTNMGEKLYL IKDFSSSSDE SRRVYPLEMY PDSKVQKIIP LNECCFVVAA 120
  121 YCGNRNDLDS RLIFYSLPTI KVGLNNETG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #9
Region A:
Residues: [1211-1407]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLPDEYGNGR VDDIFEVDFP EGFQFGTMAL YDVLHGERHV NRYSEGIRSE NDEAEVALRQ  60
   61 RRNLLLFWRN HSSTPKPSLR RAATIVYEDH VSSRYFEDIS SILGSTAMRT KRLSPYNAVA 120
  121 LDKPIQDISY DPAVQTLYVL MADQTIHKFG KDRLPCQDEY EPRWNSGYLV SRRSIVKSDL 180
  181 ICEVGLWNLS DNCKNTV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle