YRC Public Data Repository - Protein Structure Prediction

Protein:	SPN1
Organism:	Saccharomyces cerevisiae
Length:	410 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPN1.

Description	E-value	Query Range	Subject Range
gi\|7023152 - gi\|7023152\|dbj\|BAA91858.1\| unnamed protein product [Homo sapiens]	5.0E-78	[121..409]	[1..281]
gi\|12840232 - gi\|12840232\|dbj\|BAB24793.1\| unnamed protein product [Mus musculus]	7.0E-76	[137..409]	[1..265]
gi\|151942906 - gi\|151942906\|gb\|EDN61252.1\| suppresses postrecruitment functions gene number 1 [Saccharomyces cerevi... SPN1 - Protein that interacts with Spt6p and copurifies with Spt5p and RNA polymerase II, probable transcri... gi\|190408057 - gi\|190408057\|gb\|EDV11322.1\| transcription factor IWS1 [Saccharomyces cerevisiae RM11-1a] gi\|207340272 - gi\|207340272\|gb\|EDZ68676.1\| YPR133Cp-like protein [Saccharomyces cerevisiae AWRI1631] IWS1_YEAST - Transcription factor SPN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPN1 PE=1 SV=1	3.0E-73	[1..410]	[1..410]
gi\|22832350, gi\|... - gi\|24642454\|ref\|NP_573115.1\| CG9915-PA [Drosophila melanogaster], gi\|22832350\|gb\|AAF48587.2\| CG9915-...	8.0E-65	[69..409]	[5..342]
gi\|41581304, gi\|... - gi\|41581304\|emb\|CAE47953.1\| hypothetical protein, conserved [Aspergillus fumigatus], gi\|19309406\|emb...	2.0E-62	[6..404]	[2..415]
gi\|2832628, gi\|7... - pir\|\|T05037 hypothetical protein F13C5.170 - Arabidopsis thaliana, gi\|7268694\|emb\|CAB78902.1\| putat...	2.0E-55	[20..407]	[5..388]
CE05599 - status:Confirmed UniProt:Q19375 protein_id:CAA94590.1	2.0E-54	[5..409]	[62..495]

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Predicted Domain #1

Region A:
Residues: [1-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTADQEQPK VVEATPEDGT ASSQKSTINA ENENTKQNQS MEPQETSKGT SNDTKDPDNG  60
   61 EKNEEAAIDE NSNVEAAERK RKHISTDFSD DDLEKEEHND QSLQPTVENR ASKDRDSSAT 120
  121 PSSRQELEEK LDRILKKPKV RRTRRDEDDL EQYLDEKILR LKDEMNIAAQ LDIDTLNKRI 180
  181 ETGDTSLIAM QKVKLLPKVV SVLSKANLAD TILDNNLLQS VRIWLEP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [228-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPDGSLPSFE IQKSLFAALN DLPVKTEHLK ESGLGRVVIF YTKSKRVEAQ LAR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [281-410]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAEKLIAEWT RPIIGASDNY RDKRIMQLEF DSEKLRKKSV MDSAKNRKKK SKSGEDPTSR  60
   61 GSSVQTLYEQ AAARRNRAAA PAQTTTDYKY APVSNLSAVP TNARAVGVGS TLNNSEMYKR 120
  121 LTSRLNKKHK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits