| Protein: | ISR1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 443 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ISR1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [9..433] | [121..538] |
|
|
0.0 | [9..435] | [131..539] |
|
|
0.0 | [9..433] | [121..538] |
|
|
0.0 | [9..434] | [112..522] |
|
Region A: Residues: [1-76] |
1 11 21 31 41 51
| | | | | |
1 MNSTPPTSPV TRVSDGSFPS ISNNSKGFAY RQPQKHKSNF AYSHLVSPVE EPTAKFSEAF 60
61 QTDYSSKAPV ATSEAH
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.475 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.503 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.626 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.455 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.626 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.574 | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.574 | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.503 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.475 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.455 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.455 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.445 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.381 | a.118.8 | TPR-like |
| View | Download | 0.379 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.357 | a.3.1 | Cytochrome c |
| View | Download | 0.341 | a.49.1 | C-terminal domain of B transposition protein |
| View | Download | 0.334 | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.324 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.323 | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
| View | Download | 0.320 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.290 | a.39.1 | EF-hand |
| View | Download | 0.271 | a.17.1 | p8-MTCP1 |
| View | Download | 0.255 | a.4.1 | Homeodomain-like |
| View | Download | 0.241 | d.8.1 | Urease, gamma-subunit |
| View | Download | 0.223 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.221 | a.24.11 | Bacterial GAP domain |
|
Region A: Residues: [77-232] |
1 11 21 31 41 51
| | | | | |
1 LKNDLDVLFT TPRFYSPENL ALMFRLSNTV SSLEFLDEFL MGILLAPEMD FLSNPSYSLP 60
61 SNKLVGQGSY SYVYPISSSA SSRCNNDSGV VLKFAKSQHK SKVILQEALT LAYLQYMSPS 120
121 TNESHIIPFY GLTYITKSHF RRLRSNECVP GLILPK
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| Detection Method: | |
| Confidence: | 108.0 |
| Match: | 1f3mC_ |
| Description: | pak1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [233-443] |
1 11 21 31 41 51
| | | | | |
1 CEMSLYHFNT AVSHKLSLIT KRKIWWRLMK QMIDALKSLK TNGIIHGDIK TANILITEMH 60
61 VLNGGHCKDF DFYLADFTSA FHINQTPTDL NTTVEYCAPE LIDSSSDHVP TFESDLYAVG 120
121 LCLLSFISQH EPYNELQALV SHGSSPGIGS SSIQQSQWLI NALLKKDPIN LNMLRNDLFQ 180
181 DWKSELALLS RILVDRLPLE NLITILDSNY I
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| Detection Method: | |
| Confidence: | 108.0 |
| Match: | 1f3mC_ |
| Description: | pak1 |
| Matching Structure (courtesy of the PDB): |
|
