| Protein: | COG4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 861 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COG4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..861] | [1..861] |
|
|
0.0 | [26..858] | [29..774] |
|
|
0.0 | [26..858] | [29..774] |
|
|
0.0 | [23..858] | [4..765] |
|
|
0.0 | [20..858] | [18..791] |
|
|
0.0 | [65..858] | [429..1106] |
|
Region A: Residues: [1-228] |
1 11 21 31 41 51
| | | | | |
1 MEGQKSNASW ESSIIEGQLS KNLARYTLLL DKLSTLSQID KLSEVIANDY AKQSKQLNAF 60
61 VQQSQSSLNK ESRKLELQRT NLTTTLTQFH ETVATISSSN ARAKAIHDDI ETVDQERALV 120
121 NKTLQFVKDV RTLKNNISLA HSALETKDYL VAATAINEIR SLPDKKLIVS EFAKKVVPSS 180
181 EIPEEPAILI KNWCKELTSL FQEQFMEATR TQDIKELTLM FKMFPMIG
|
| Detection Method: |  |
| Confidence: | 7.522879 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [229-558] |
1 11 21 31 41 51
| | | | | |
1 QDVLGLDLYS KYVCDIIADE SRKIMSNSME NSTKFQGFFS QVLLHLFKIV STIINDHSKV 60
61 IATCYGKKHM VHVMEKVEKE ADLQASLILD IFMETRKIER TIHDINEWEH SQKNEDVNID 120
121 SNQSDIETDG ETEKSSIISI HDLALLIMEF SQILQNWSMY SRFYSVKWNE FSDLHPHVLQ 180
181 PPPPIADGKF ALKLKQDKVF DEFQVFVLNH LQRSFRNSIS LEELPSLNDL ITAVPLNDHD 240
241 NISYPVTSVL DDLILLVRKN LISVVNTGQF KLLASFLNEL VKFFQNRFLV KFMQNKFKLL 300
301 QSKLASNVSL KRYIPKGEEQ SATSRSVSPP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [559-861] |
1 11 21 31 41 51
| | | | | |
1 ANKFSPLSRF TFRGAAASAL TNIQSNLQAV VAEDEDSILA LHHYLIYLNT LYLSKVYVHR 60
61 LLSIEILEDD SQRILRDNFP FDNDAAQLQN LIINSEKLVL EQTDKLSKWA VKYLFQNILQ 120
121 NRVRNLLGTV FVNSASSNSS TSNQKNVSRD YSAGSNQKNY ITSIEDFEDL SQINSFNSKW 180
181 NQLIIPYKNI LHNEAYAELL SVIVDYIVTT LEQRIWTLEF NELGVTKLDR ELSLFIGNMC 240
241 GLNYNLREKF LKLTQIVLLL GLDDDNFDLT TGDIKDDFNG TFDWVINSQE RIKARNMKID 300
301 RTQ
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
