YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL11A
Organism:	Saccharomyces cerevisiae
Length:	174 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL11A.

Description	E-value	Query Range	Subject Range
gi\|187609302 - gi\|187609302\|pdb\|2ZKR\|DD Chain d, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Compl... tr\|G1TUB8\|G1TUB8... - Uncharacterized protein OS=Oryctolagus cuniculus GN=RPL11 PE=1 SV=2 gi\|208967312 - gi\|208967312\|dbj\|BAG73670.1\| ribosomal protein L11 [synthetic construct] RL11_CHILA - 60S ribosomal protein L11 OS=Chinchilla lanigera GN=RPL11 PE=2 SV=3 RL11_BOVIN - 60S ribosomal protein L11 OS=Bos taurus GN=RPL11 PE=2 SV=3 gi\|149695161 - gi\|149695161\|ref\|XP_001504267.1\| PREDICTED: similar to 60S ribosomal protein L11 [Equus caballus] RL11_RAT - 60S ribosomal protein L11 OS=Rattus norvegicus GN=Rpl11 PE=1 SV=2 gi\|57678 - gi\|57678\|emb\|CAA44072.1\| ribosomal protein L11 [Rattus rattus] gi\|51980366 - gb\|AAH82185.1\| Unknown (protein for MGC:98663) [Xenopus laevis] RPL11 - ribosomal protein L11 RL11_MOUSE - 60S ribosomal protein L11 OS=Mus musculus GN=Rpl11 PE=1 SV=4	1.0E-68	[4..172]	[7..175]
gi\|14719845, gi\|... - gi\|17512001\|gb\|AAH18970.1\| Ribosomal protein L11 [Homo sapiens], gi\|14719845\|gb\|AAD20460.3\| ribosoma... gi\|157929150, gi... - gi\|157929150\|gb\|ABW03860.1\| ribosomal protein L11 [synthetic construct], gi\|124000405\|gb\|ABM87711.1\|...	1.0E-68	[4..172]	[6..174]
RL11_ICTPU - 60S ribosomal protein L11 OS=Ictalurus punctatus GN=rpl11 PE=2 SV=3	2.0E-66	[3..172]	[6..175]
gi\|195584878, gi... - gi\|195584878\|ref\|XP_002082231.1\| GD11455 [Drosophila simulans], gi\|194194240\|gb\|EDX07816.1\| GD11455 ... gi\|195487141, gi... - gi\|195487141\|ref\|XP_002091784.1\| GE12050 [Drosophila yakuba], gi\|194177885\|gb\|EDW91496.1\| GE12050 [D... gi\|190657997, gi... - gi\|194881348\|ref\|XP_001974810.1\| GG21971 [Drosophila erecta], gi\|190657997\|gb\|EDV55210.1\| GG21971 [D... gi\|220942810, gi... - gi\|220953014\|gb\|ACL89050.1\| RpL11-PA [synthetic construct], gi\|220942810\|gb\|ACL83948.1\| RpL11-PA [sy... FBpp0309436, RpL... - The gene Ribosomal protein L11 is referred to in FlyBase by the symbol Dmel\RpL11 (CG7726, FBgn00133...	4.0E-66	[6..173]	[14..181]
gi\|28630287 - gi\|28630287\|gb\|AAN73370.1\| ribosomal protein L11 [Petromyzon marinus]	5.0E-66	[3..172]	[7..176]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	5.0E-66	[4..172]	[7..175]
gi\|15825503 - gi\|15825503\|gb\|AAL09706.1\|AF420431_1 ribosomal protein L11 [Branchiostoma belcheri]	8.0E-66	[6..172]	[9..175]

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Predicted Domain #1

Region A:
Residues: [1-174]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAKAQNPMR DLKIEKLVLN ISVGESGDRL TRASKVLEQL SGQTPVQSKA RYTVRTFGIR  60
   61 RNEKIAVHVT VRGPKAEEIL ERGLKVKEYQ LRDRNFSATG NFGFGIDEHI DLGIKYDPSI 120
  121 GIFGMDFYVV MNRPGARVTR RKRCKGTVGN SHKTTKEDTV SWFKQKYDAD VLDK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	330.679424
Match:	1ffkD_
Description:	Ribosomal protein L5
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits