| Protein: | SYT1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1226 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYT1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1226] | [1..1226] |
|
|
2.0E-95 | [334..730] | [601..978] |
|
|
3.0E-94 | [334..730] | [601..978] |
|
|
2.0E-93 | [321..732] | [536..927] |
|
|
2.0E-92 | [321..716] | [515..896] |
|
|
8.0E-91 | [335..730] | [560..930] |
|
|
3.0E-85 | [330..716] | [420..783] |
|
Region A: Residues: [1-408] |
1 11 21 31 41 51
| | | | | |
1 MNQSISSLIK LKFLQSHSND KNGNKKGGSN VSTGIDKLRE SESYRSPFLQ LAEIQEHTNN 60
61 DDDKLDVKEC EPTKKHSKLS RIRRKMGRLD LNFRSANEKG SEDDEILVAQ HLRNGQDPEE 120
121 MPFKSENNID SIEKVPKPDG ERVTLTSSGS DNVKRNSKHA PFIPVKPALE KFPSSNRLSR 180
181 DYRKSQEPTL FNGDRLVPTL PTVSRISTSS SVGSSTAASR YFNPSKRAVV ASSSSSSSSI 240
241 KFNSLHAIPL DATPQIELAK QQDEISKRRF GRRRSRTVDV FDYINKNNTA KNKPPLSPSS 300
301 FIRTIDEKNT NSLMQDPMGS RGPLLPDDAN IISNDTDGAE ASHPDHQVLS RSRSQSTSFV 360
361 QGKGGKRKSI EDEGYHNKLG LPHGSGPTSV YNNKSNANST ITGMSRRS
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [409-489] |
1 11 21 31 41 51
| | | | | |
1 SSIVNALSSF VNLRSSSLSS SRQQHLQQQQ QLQQKLDVSL EDLPPVPAPE FSDSCKDFLI 60
61 KLAPYGKFIG IILTEKDDEF K
|
| Detection Method: | |
| Confidence: | 160.014858 |
| Match: | 1bc9__ |
| Description: | Cytohesin-1/b2-1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [490-688] |
1 11 21 31 41 51
| | | | | |
1 KNCLNYLLTN CFEFKNDPLD IALRKLLMFL ELPKETQQID RLIMAFSFAY YKAQKSYSKK 60
61 KGIECPWSNA DQVYFIAFSL LMLHTDYFNP NNKSKMTKHD FVDLVHNDKY SGGNEIPMAV 120
121 LTYFYENVTA KESPKFNYFL MSPMALDDSI LDKDAFDTNF AITLSSNSMY SPIDMIKRGS 180
181 IIPKEASLSP IFYPLTNSI
|
| Detection Method: | |
| Confidence: | 160.014858 |
| Match: | 1bc9__ |
| Description: | Cytohesin-1/b2-1 |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ARF guanyl-nucleotide exchange factor activity | 3.21855719969171 | bayes_pls_golite062009 |
| small GTPase regulator activity | 2.45131212153136 | bayes_pls_golite062009 |
| binding | 2.00452575860615 | bayes_pls_golite062009 |
| enzyme regulator activity | 1.95409587538646 | bayes_pls_golite062009 |
| protein binding | 1.10832780583804 | bayes_pls_golite062009 |
| nucleoside-triphosphatase regulator activity | 0.206011675725808 | bayes_pls_golite062009 |
| guanyl-nucleotide exchange factor activity | 0.16794422214995 | bayes_pls_golite062009 |
| GTPase regulator activity | 0.134262037414542 | bayes_pls_golite062009 |
|
Region A: Residues: [689-1226] |
1 11 21 31 41 51
| | | | | |
1 SASGIAPSTA ASCPPSTSGT INGANLGTAN SNSNRPASNS ISSYFSYNPS SSSSGNATLV 60
61 QDDINVYSHI INDTLNEVNL FPEVSKYWNK NALKANLLRN EEHKYEKYYS IMNDTKGGYL 120
121 RFHKSQLNKL NLPNFEILND NSRSGCKNSD YKYCKILQMG AIMNLGMPSR KFSIVNSAKI 180
181 HWKKEFAILT SLGLLICDKM DWINPQMMKD PKSGTTNYII DFKSGFSFVP GSTIDVYNGL 240
241 FADRERDSLG KSHFASLVLA YTEHHSTGSH TSNTTAASSS AKHNEGVFEP SSDEEDSITN 300
301 STDGTSSVSN GESDNDSVSS SDNQLSSNDS NEDYHSIKDE YPIFEDENAD CLLYLHTCHR 360
361 NFIWKCANKY ERDNWIDSIN LFSAYDGCYV EIGSIANTIC NKRKLTILQR MERLRSIKSA 420
421 KWEKLKKFES TLMLMGKCVP ISTKTKTDMI NRIRQLAVRM DWLIYEIKRS ELFVSIIKEV 480
481 TRKQAEKNIL EHGKGEEEGQ GNNDDSDGID DIEESFLFNE NSLQVCVSDS SYDEYSNE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
