YRC Public Data Repository - Protein Structure Prediction

Protein:	RDS3
Organism:	Saccharomyces cerevisiae
Length:	107 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RDS3.

Description	E-value	Query Range	Subject Range
gi\|25406958, gi\|... - gi\|8954029\|gb\|AAF82203.1\|AC067971_11 Identical to an unknown protein F23F1.8 gi\|7486045 from Arabido...	191.0	[0..1]	[105..1]
gi\|39794099 - gi\|39794099\|gb\|AAH63807.1\| Phf5a protein [Rattus norvegicus]	179.0	[0..1]	[105..1]
gi\|167872294, gi... - gi\|170050839\|ref\|XP_001861492.1\| pre-mRNA-splicing factor ini1 [Culex quinquefasciatus], gi\|16787229... gi\|108880783, gi... - gi\|157137675\|ref\|XP_001657126.1\| hypothetical protein AaeL_AAEL003695 [Aedes aegypti], gi\|108880783\|...	170.0	[0..1]	[105..1]
gi\|21301692, gi\|... - gi\|31234226\|ref\|XP_319026.1\| AGAP009905-PA [Anopheles gambiae str. PEST], gi\|21301692\|gb\|EAA13837.1\|... AGAP009905-PA - PHD finger-like domain-containing protein 5A\|protein_coding\|3R:45185052:45185553:1\|gene:AGAP009905	170.0	[0..1]	[105..1]
gi\|115969413, gi... - gi\|72032358\|ref\|XP_799069.1\| PREDICTED: similar to conserved hypothetical protein [Strongylocentrotu...	170.0	[0..1]	[105..1]
gi\|91093335 - gi\|91093335\|ref\|XP_967031.1\| PREDICTED: similar to PHD-finger 5A [Tribolium castaneum]	170.0	[0..1]	[105..1]
gi\|357123892\|ref... - PREDICTED: uncharacterized protein At1g07170/At2g30000-like [Brachypodium distachyon], PREDICTED: un... gi\|50929409, gi\|... - gi\|50929409\|ref\|XP_474232.1\| OSJNBa0084K01.16 [Oryza sativa (japonica cultivar-group)], gi\|47777378\|... gi\|116309854, gi... - gi\|125552053\|gb\|EAY97762.1\| hypothetical protein OsI_19674 [Oryza sativa Indica Group], gi\|125550107... gi\|255627145 - gi\|255627145\|gb\|ACU13917.1\| unknown [Glycine max] NbS00026464g0002... - protein AED:0.38 eAED:0.38 QI:184\|1\|0.5\|1\|0\|0.5\|2\|0\|110; (*GB) gi\|115461126\|ref\|NP_001054163.1\| (e_v... gi\|255582664, gi... - gi\|255582664\|ref\|XP_002532111.1\| Pre-mRNA-splicing factor ini1 [Ricinus communis], gi\|223528214\|gb\|E... gi\|242077540, gi... - gi\|242077540\|ref\|XP_002448706.1\| hypothetical protein SORBIDRAFT_06g031860 [Sorghum bicolor], gi\|242... gi\|225434558, gi... - gi\|225434558\|ref\|XP_002277443.1\| PREDICTED: similar to translation initiation factor IF-2 [Vitis vin... gi\|118484477, gi... - gi\|224103931\|ref\|XP_002313249.1\| predicted protein [Populus trichocarpa], gi\|224059768\|ref\|XP_002299... PGSC0003DMP400013901 - PGSC0003DMT400020416	169.0	[0..1]	[105..1]
gi\|157772625 - gi\|157772625\|ref\|XP_001664377.1\| hypothetical protein CBG15662 [Caenorhabditis briggsae AF16] CRE19561 - RP06082 WBGene00072657 locus:Cre-phf-5 status:Predicted gi\|187026944, gi... - gi\|39588836\|emb\|CAE69466.1\| Hypothetical protein CBG15662 [Caenorhabditis briggsae], gi\|187026944\|em...	169.0	[0..1]	[105..1]
INI1_SCHPO - Pre-mRNA-splicing factor ini1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ini1 PE=3 SV... ini1 - RING finger-like protein Ini1	168.0	[0..1]	[105..1]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRHQFDLIM CLKQPGVQTG LLCEKCDGKC PICDSYVRPK RKVRVCENCS FGKQAKNCII  60
   61 CNLNVGVNDA FYCWECCRLG KDKDGCPRIL NLGSNRLDRH FEKKKKV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.09
Match:	1we9A
Description:	Solution structure of PHD domain in nucleic acid binding protein-like NP_197993
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits