YRC Public Data Repository - Protein Structure Prediction

Protein:	YPR090W
Organism:	Saccharomyces cerevisiae
Length:	736 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPR090W.

Description	E-value	Query Range	Subject Range
SPAC25B8.08 - conserved fungal family YL88_SCHPO - Dilute domain-containing protein C25B8.08 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=...	0.0	[77..624]	[101..524]
gi\|85080162 - gi\|85080162\|ref\|XP_956495.1\| hypothetical protein NCU01817 [Neurospora crassa OR74A] gi\|28917561, gi\|... - gi\|32415555\|ref\|XP_328256.1\| hypothetical protein [Neurospora crassa], gi\|28917561\|gb\|EAA27259.1\| hy...	2.0E-95	[5..597]	[248..710]
MYO5A_CHICK - Unconventional myosin-Va OS=Gallus gallus GN=MYO5A PE=1 SV=1	1.0E-68	[19..279]	[1359..1612]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-68	[19..279]	[1358..1611]
gi\|1770741, gi\|1... - gi\|1770741\|emb\|CAA69035.1\| mysoin heavy chain 12 [Homo sapiens], pir\|\|A59254 mysoin heavy chain 12, ...	1.0E-68	[19..279]	[1385..1638]
MYO5A_RAT - Unconventional myosin-Va OS=Rattus norvegicus GN=Myo5a PE=1 SV=1	8.0E-68	[19..279]	[1358..1611]
gi\|8745416, gi\|4... - gi\|8745416\|gb\|AAF78910.1\|AF248863_1 myosin V [Strongylocentrotus purpuratus], gi\|47550963\|ref\|NP_999...	6.0E-67	[17..309]	[1335..1635]
gi\|447739 - gi\|447739\|prf\|\|1915304A nylB upstream ORF	4.0E-66	[19..279]	[1357..1635]

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Predicted Domain #1

Region A:
Residues: [1-334]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNKAGLTAW DMVPPYSPLS EFLEQNNMFR YRTEVKHEIP QISQPKDTSL LMSNEDSTTK  60
   61 ETFDNIDLQV AGLTLSPGAN DNMFLDSDEK NMNHSQGAAT LIDPTYTEDY HGTFDYDKLS 120
  121 PDQYLEFSDF DIPQILNLLI SLPQKEPHMT TYPAGLIYQC IRYADHKIKS KPLVESLINL 180
  181 SLTKILTSVS SNGAAGLVST EASLQAGDIV LQSYWLSCLS FLYYYLCRDD SFFKRHPSVL 240
  241 QELINTIHSI IIELTSSIHC RLISLIDSTL LAYTTIQDVK QTLYKRDWNF FKKRKQAKLL 300
  301 LKEKNRKQLK EQQKKELHRK SQGQENHEEE EGQQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [335-736]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGNDSDDRAS TNDDNNSSVS LFYDKEILRH LYPPSFEEQM KPSPLKIVQI FGALSYVLNL  60
   61 HQTHPIFQQQ CLSISVNWFA TTLFNKILKD KKKRSLSRAH AIQIRLNLST LESWIQNNDF 120
  121 CVPKPMLIDD FMWQRFPMTL IRDVGEIDLS DPILRNVATY KPIDENNKDL IYDTSNSLFY 180
  181 YQPFHKIAQI HLEPVFQLLQ WLQVATTLDS EESLISTMNL LPRITPVQLL KSMEKYNYEL 240
  241 NENKFNSKLK KFLNNKIKDS KMSKADAYLQ EHEIPYLVLP TIPEMTDLYS KGPDSHSFQP 300
  301 FLPGSIQDDV YEIHDVNFKQ RQNEPQISRT NSGTSDFTGD EDKAQYETEG VGESIDINET 360
  361 VEPESNAFNV GNDDYFKELN IPSSTAQRPA WSNNDDMEQN PW

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits