| Protein: | APL4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 832 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APL4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [3..825] | [5..817] |
|
|
0.0 | [3..825] | [5..814] |
|
|
0.0 | [3..825] | [5..811] |
|
|
0.0 | [3..825] | [11..813] |
|
|
0.0 | [5..832] | [13..822] |
|
Region A: Residues: [1-104] |
1 11 21 31 41 51
| | | | | |
1 MGSSLRSFIK DVRGAKTLAD ERAIITKQSA KIRTKLRDDH LPHEKRRVNI QKLLYLYILG 60
61 EKTHFGQVES INLIASDDFV DKRLGYLAAT LLLDESEDLL TLLT
|
| Detection Method: |  |
| Confidence: | 402.9897 |
| Match: | 1gw5A_ |
| Description: | Adaptin alpha C subunit N-terminal fragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [105-178] |
1 11 21 31 41 51
| | | | | |
1 NMLNNDLHHP NKYAVSLALT SLGFLSSPEL ARDLYPDVEN IIKNSRDPFL LKKALQCAAK 60
61 LIFKDVSLLE IFNI
|
| Detection Method: | |
| Confidence: | 402.9897 |
| Match: | 1gw5A_ |
| Description: | Adaptin alpha C subunit N-terminal fragment |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 1.57801165255065 | bayes_pls_golite062009 |
| binding | 1.4853299341494 | bayes_pls_golite062009 |
| transporter activity | 1.4237388137024 | bayes_pls_golite062009 |
|
Region A: Residues: [179-337] |
1 11 21 31 41 51
| | | | | |
1 EDITKILSSH SICTHGVLLG VTKIIQSILL IGLNRKKDED EDEDGIDYSN DILSPLSLLL 60
61 RDFFIRLENM NSKNIEPGYD VQGICDPFLQ CEIIYTLKLY FQVGELLNSN NVLDYKDNFC 120
121 DLLTRIATNT DSTKNSGQAI LYETVKTIFS LDLNQPLRV
|
| Detection Method: | |
| Confidence: | 402.9897 |
| Match: | 1gw5A_ |
| Description: | Adaptin alpha C subunit N-terminal fragment |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [338-407] |
1 11 21 31 41 51
| | | | | |
1 LGINILAKFL AGKDNNTKYV SLNTLLKVVP QEPTAVQRHR KFISHCLQDT DVSIRMRALE 60
61 LSFAILDDSN
|
| Detection Method: | |
| Confidence: | 402.9897 |
| Match: | 1gw5A_ |
| Description: | Adaptin alpha C subunit N-terminal fragment |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [408-534] |
1 11 21 31 41 51
| | | | | |
1 LVELVNELMK FLAKQDEDSK DLIIYTIDHL IDTFDTRVVK DESWKLDVFF NILKLVGSFI 60
61 NYEKINDILI IINNTSQLSD KSEFLRKMLT ISLNGTSAEI SEENIGWQLV LIWCIGEYGD 120
121 LVLNEGN
|
| Detection Method: | |
| Confidence: | 402.9897 |
| Match: | 1gw5A_ |
| Description: | Adaptin alpha C subunit N-terminal fragment |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [535-688] |
1 11 21 31 41 51
| | | | | |
1 KNGADIINES SITDYLLTLQ ELYTATNLKI INYILTAALK LSVRFHDAKN IEKLRQLILS 60
61 YTDSTDLSLQ MKSNQYEIFF NQSISVKKII LETMPKFEKI TEEQDNGKAL SKNLISNEPV 120
121 DLLSDLLGED SKAESKASTG DNVKPIDILE EIFG
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [689-832] |
1 11 21 31 41 51
| | | | | |
1 EKNDIAQVPK NANKEESINH SSAVEANSGV TLPLDANKIY DSSSLNVYAS LLSANSGLAH 60
61 LDLYFQAKSL ISDLKTFCAV PKAQKLTLGQ LYPSSTINAS QICKQSLKIS GSGKLKLRVK 120
121 LDFHLNGSSS ITNEQFDHKF DETL
|
| Detection Method: | |
| Confidence: | 31.0 |
| Match: | 1iu1A_ |
| Description: | Gamma1-adaptin domain |
Matching Structure (courtesy of the PDB): |
|
