YRC Public Data Repository - Protein Structure Prediction

Protein:	KEL3
Organism:	Saccharomyces cerevisiae
Length:	651 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KEL3.

Description	E-value	Query Range	Subject Range
gi\|149038370, gi... - gi\|149038370\|gb\|EDL92730.1\| rCG51065, isoform CRA_a [Rattus norvegicus], gi\|109509005\|ref\|XP_0010791...	361.0	[0..21]	[615..15]
gi\|113564697, gi... - gi\|115459052\|ref\|NP_001053126.1\| Os04g0483600 [Oryza sativa (japonica cultivar-group)], gi\|113564697...	360.0	[0..17]	[622..13]
gi\|15724228, gi\|... - gi\|18423130\|ref\|NP_568723.1\| kelch repeat-containing protein [Arabidopsis thaliana], gi\|15724228\|gb\|...	359.0	[0..19]	[622..15]
gi\|116310471 - gi\|116310471\|emb\|CAH67474.1\| H0805A05.4 [Oryza sativa (indica cultivar-group)]	358.0	[0..19]	[622..15]
KLDC4_MOUSE - Kelch domain-containing protein 4 OS=Mus musculus GN=Klhdc4 PE=2 SV=2	355.0	[0..21]	[615..15]
KLHDC4 - kelch domain containing 4	344.0	[0..21]	[541..15]
gi\|114664006, gi... - gi\|114664006\|ref\|XP_001157288.1\| PREDICTED: kelch domain containing 4 isoform 5 [Pan troglodytes], g...	335.0	[0..21]	[536..15]

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Predicted Domain #1

Region A:
Residues: [1-420]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKNKKDKE AKKARAELKN QKNQKKQEKK FQKNKNKSLN GEEDDESDQD LDEILSSFSK  60
   61 KQIELEHVDI TSVEKPSCRT HPLMFANPQH NKHELFIFGG EFTDPETKLT HFYNDLYSYS 120
  121 IKNNSWKKYV SQNAPLPRSS AAVAVHPSGI ALLHGGEFSS PKQSKFYHYS DTWLFDCVER 180
  181 KFTKLEFGGR DSSPSARSGH RIIAWKNYFI LFGGFRDLGN GQTSYLNDLW CFDISTYKWT 240
  241 KLETNSKPDA RSGHCFIPTD NSAILMGGYC KIIAKNNKNL MKGKILNDAW KLNLTPDPKK 300
  301 WQWEKLKNFK NQPSPRVGYS FNLWKQNKSV AFGGVYDLQE TEESLESVFY NDLYMFHLEL 360
  361 NKWSKLRIKP QRQTNSKNSP ATSKRKSNKD QEKELQDLLN SILAKSNLND DDDDNDDNST 420
  421

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.0
Match:	1gofA
Description:	NOVEL THIOETHER BOND REVEALED BY A 1.7 ANGSTROMS CRYSTAL STRUCTURE OF GALACTOSE OXIDASE
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [421-568]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGPNSIDDDE DNEDDSDLDN QEDITISNQL PHPRFNAATC VVGDSLFIYS GVWELGEKDY  60
   61 PINSFYSIDL NKLDGVKVYW EDLSAIEEAK RLGDRDSDED EFEYEDDEED EDDGEEEQDA 120
  121 GPLEGDEDEE SESDDDKQAQ MEIPDERS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [569-651]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WLPHPKPFET LRAFYLREGA NFLTWSISNN RNLKGKQLKT KSFELCEDRW WERRDQVTLE  60
   61 EERLEDTGGI IERDTTTKPS KRR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits