YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: YPL260W
Organism: Saccharomyces cerevisiae
Length: 551 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPL260W.

Description E-value Query
Range
Subject
Range
YPL260W - Putative substrate of cAMP-dependent protein kinase (PKA); green fluorescent protein (GFP)-fusion pr...
YP260_YEAST - UPF0662 protein YPL260W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPL260W PE=1 SV=...
gi|190407705 - gi|190407705|gb|EDV10970.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
0.0 [1..551] [1..551]
YLF8_SCHPO - UPF0662 protein C30C2.08 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC30C2.08 PE=3 ...
SPAC30C2.08 - conserved fungal protein
0.0 [13..525] [10..456]
gi|32421815, gi|... - gi|32421815|ref|XP_331351.1| hypothetical protein [Neurospora crassa], gi|28922198|gb|EAA31447.1| hy...
gi|85098883 - gi|85098883|ref|XP_960683.1| hypothetical protein [Neurospora crassa OR74A]
0.0 [124..510] [33..383]

Back

Predicted Domain #1
Region A:
Residues: [1-159]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFASAGQQHP QIVPKEEESI LNYLLEVRSS LAKLKQNRTQ YLNSKDVQTT YQHVLTKVRE  60
   61 LDDIRKNSHE TPAKSAATLI HSTELHNRVD SVLDDVFQLL SLCFLTVGLK NSAPATYASL 120
  121 STVESLLEHL NESNVFTHHD LSPIKERLEE ISKIVEQKN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [160-263]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSPAYDEDGN DDRLREIDNE RKKNKIEEDL LLRAKLKHCK DEYDILEGKL EEIDPSLSTV  60
   61 MEKLFRIRRG LLSLVASAKK TMSKSDINTN SLLQEQNDLQ TNNE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [264-551]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLTDDKHLVS QEYVHEKLSV LKNELSELES NRDDSGKFKS LESHQVAEKG QSVLNGLLDD  60
   61 CHDLVNDLSH QKNGGLTLDP YLQPIYEQLI DIKTTLENLM ITRRWTLRET DLFSYQKKLN 120
  121 EIDNKRINGK FPTKSQDSKG QSILLYLLRR CYAIIYKLLE SSEPVSEALQ PIHNQLSTVR 180
  181 RCLLELKRMG GVNNERELYP YQMKLASLDN LRTEGIFYDS DGNIPEGQGI LNALLAECFD 240
  241 ILHELKVEAE EKAQNSTSSD GSDDDDNGES GIDSNSNDSE PESEYQQE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle