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View Structure Prediction Details

Protein: YAH1
Organism: Saccharomyces cerevisiae
Length: 172 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAH1.

Description E-value Query
Range		 Subject
Range
ADRX_YEAST - Adrenodoxin homolog, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YAH1 ...
gi|151942550 - gi|151942550|gb|EDN60896.1| adrenodoxin-like protein [Saccharomyces cerevisiae YJM789]
YAH1 - Ferredoxin of the mitochondrial matrix required for formation of cellular iron-sulfur proteins; invo...
 2.0E-42 [1..172] [1..172]
MFDX2_ARATH - Adrenodoxin-like protein 2, mitochondrial OS=Arabidopsis thaliana GN=MFDX2 PE=2 SV=1
 1.0E-37 [1..171] [13..192]
etp1 - mitochondrial type I [2Fe-2S] ferredoxin Etp1 / cytochrome oxidase cofactor Cox15, fusion
gi|19115748 - gi|19115748|ref|NP_594836.1| mitochondrial type I [2Fe-2S] ferredoxin Etp1/ cytochrome oxidase cofac...
 7.0E-36 [9..169] [467..627]
gi|218198975 - gi|218198975|gb|EEC81402.1| hypothetical protein OsI_24632 [Oryza sativa Indica Group]
gi|222636316, gi... - gi|50933753|ref|XP_476404.1| putative ferredoxin [Oryza sativa (japonica cultivar-group)], gi|331464...
 2.0E-33 [5..171] [12..176]
gi|32416044, gi|... - gi|32416044|ref|XP_328500.1| hypothetical protein [Neurospora crassa], gi|28919405|gb|EAA28849.1| hy...
gi|85089735 - gi|85089735|ref|XP_958085.1| hypothetical protein NCU07794 [Neurospora crassa OR74A]
 9.0E-32 [3..171] [9..189]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 5.0E-31 [27..171] [1..149]
gi|30313424 - gi|30313424|gb|AAM50091.1| ferredoxin-like protein Fd1 [Cryptosporidium parvum]
 1.0E-30 [12..171] [7..162]

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Predicted Domain #1
Region A:
Residues: [1-51] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKIVTRAGH TARISNIAAH LLRTSPSLLT RTTTTTRFLP FSTSSFLNHG H

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 2.522879
Match: 1cqxA_
Description: Flavohemoglobin, N-terminal domain; Flavohemoglobin, central domain; Flavohemoglobin, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ferrous iron binding 1.85747866468448 bayes_pls_golite062009
binding 1.43854872579441 bayes_pls_golite062009
2 iron, 2 sulfur cluster binding 0.64064605761447 bayes_pls_golite062009
iron ion binding 0.573352512627799 bayes_pls_golite062009
electron carrier activity 0.304665256428442 bayes_pls_golite062009
protein binding 0.299955399062748 bayes_pls_golite062009
iron-sulfur cluster binding 0.19654473978775 bayes_pls_golite062009
metal cluster binding 0.19654473978775 bayes_pls_golite062009
catalytic activity 0.105119876745552 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [52-172] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKKPKPGEEL KITFILKDGS QKTYEVCEGE TILDIAQGHN LDMEGACGGS CACSTCHVIV  60
   61 DPDYYDALPE PEDDENDMLD LAYGLTETSR LGCQIKMSKD IDGIRVALPQ MTRNVNNNDF 120
  121 S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 216.315398
Match: 1l6uA_
Description: Adrenodoxin
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle