YRC Public Data Repository - Protein Structure Prediction

Protein:	ICY2
Organism:	Saccharomyces cerevisiae
Length:	136 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ICY2.

Description	E-value	Query Range	Subject Range
ICY1 - Protein of unknown function, required for viability in rich media of cells lacking mitochondrial DNA... ICY1_YEAST - Interacting with cytoskeleton protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=... gi\|190408421 - gi\|190408421\|gb\|EDV11686.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]	186.0	[0..1]	[135..1]

Back

Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSVESSPIS RYEDEVFPLS FSNVAFEPPM LSHSPDRSTY ADDFSQSYQQ ELLTFPLSYP  60
   61 IVDESECTHT KDKTDSNIIT STEDDCMFDM EFNGNAASAV AAASKESNSA SGFAFASNDA 120
  121 FANVAQQNYR LWLSSV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits