| Protein: | GYP5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 894 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GYP5.
| Description | E-value | Query Range |
Subject Range |
|
|
443.0 | [0..1] | [707..124] |
|
Region A: Residues: [1-412] |
1 11 21 31 41 51
| | | | | |
1 MSSDKSIEKN TDTIASEVHE GDNHSNNLGS MEEEIKSTPS DQYEEIAIIP TEPLHSDKEL 60
61 NDKQQSLGHE APTNVSREEP IGISGDEDTQ ITEQNVNEQR QETREPSSEI DLNEPLDVEK 120
121 DVTTDVQAPN GLNIEKEYDA VKENEKVYAD TKEVVSSPEN REVTGKNSGG EKSSSSKFLD 180
181 DESGTTTAAN ANDISISSEV TPERSSENDN NQIHITNEVA AGINLNENKE QKAAIEDGPV 240
241 TAENLSSETA RKVPPIPTQI INEKGDNSSE NEVSAIPTTS SPPLPPRQNV ATSTSPKLPP 300
301 RGKQREQPPK TKNAVPPPLE EEMKSEKFRK NFEETKRNSY HHVPLTGSKT AQLESTAEIN 360
361 LIASRYRKTS HHLNKEGEET RESLQEGQSF LKSTFTSFLE NLSEYNEVEN VN
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [413-637] |
1 11 21 31 41 51
| | | | | |
1 EEDREMFKID WSFWTQVVND YATVASNEPE NLEAHVTNGI PPQIRGIIWQ LMANSKSREM 60
61 EDIYETLLDT ECLHEATIRR DLRRTKFVAE DKMESLYKVI KVYSVYDPDV GYTQGMGFIA 120
121 APLLINCENE AESFGLLVGL MKNYGLRELF LPGMPGLMLM LYQFDRLLEE HSPSLYNRLI 180
181 REGISSTMYA TQWFLTFFAY KFPLEFVLRI FDIVFVEGIE VLLKF
|
| Detection Method: | |
| Confidence: | 36.221849 |
| Match: | 1fkmA_ |
| Description: | Ypt/Rab-GAP domain of gyp1p |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [638-813] |
1 11 21 31 41 51
| | | | | |
1 AVNLMLKNEE TLVKLRFDEL LDFLKDELFN YYLMGNQDDA SVVQMGLSNG NSFKGNDDGT 60
61 FSYNVDLFVH DAMTGVYITP LTLRRYRGEY VEIHEKEQKK EDHYESLRIQ NHQLQREAQK 120
121 LEHDYSILNK ENISAANELI QNRLNMEMLL DEKNDLINTI TDIKSQIEEE IRKQNL
|
| Detection Method: | |
| Confidence: | 22.69897 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [814-894] |
1 11 21 31 41 51
| | | | | |
1 PNPDASLPKA DLREDLERTI SRNNEVMREN GQLEERITEL QAEIDELINI NKEQVSTASL 60
61 LERDSKAKGR KGWTGFKKVF K
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.579 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.631 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.651 | a.101.1 | Uteroglobin-like |
| View | Download | 0.664 | f.15.1 | Small-conductance potassium channel |
| View | Download | 0.564 | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.551 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.550 | a.51.1 | Cytochrome c oxidase subunit h |
| View | Download | 0.497 | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.480 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.467 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.462 | a.64.1 | Saposin |
| View | Download | 0.448 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.436 | a.8.2 | Plasmid maintenance system epsilon/zeta, antidote epsilon subunit |
| View | Download | 0.432 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.418 | d.8.1 | Urease, gamma-subunit |
| View | Download | 0.417 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.408 | a.1.1 | Globin-like |
| View | Download | 0.407 | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.403 | a.112.1 | Description not found. |
| View | Download | 0.403 | a.2.7 | tRNA-binding arm |
| View | Download | 0.382 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.380 | a.4.1 | Homeodomain-like |
| View | Download | 0.378 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.377 | d.188.1 | Prokaryotic ribosomal protein L17 |
| View | Download | 0.361 | a.126.1 | Serum albumin-like |
| View | Download | 0.345 | a.24.3 | Cytochromes |
| View | Download | 0.327 | a.2.3 | Chaperone J-domain |
| View | Download | 0.309 | a.46.1 | Methionine synthase domain |
| View | Download | 0.306 | a.39.1 | EF-hand |
| View | Download | 0.300 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.291 | a.24.11 | Bacterial GAP domain |
| View | Download | 0.281 | a.23.4 | Mitochondrial import receptor subunit Tom20 |
| View | Download | 0.274 | a.118.8 | TPR-like |
| View | Download | 0.274 | a.157.1 | Skp1 dimerisation domain-like |
| View | Download | 0.273 | d.15.2 | CAD & PB1 domains |
| View | Download | 0.270 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.269 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.266 | d.26.1 | FKBP-like |
| View | Download | 0.266 | a.7.7 | BAG domain |
| View | Download | 0.265 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.264 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.258 | a.57.1 | Protein HNS-dependent expression A; HdeA |
| View | Download | 0.252 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.252 | a.85.1 | Hemocyanin, N-terminal domain |
| View | Download | 0.249 | a.39.1 | EF-hand |
| View | Download | 0.248 | a.39.1 | EF-hand |
| View | Download | 0.248 | a.39.1 | EF-hand |
| View | Download | 0.245 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.245 | a.71.2 | Helical domain of Sec23/24 |
| View | Download | 0.234 | a.17.1 | p8-MTCP1 |
| View | Download | 0.222 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.222 | a.4.12 | TrpR-like |
| View | Download | 0.216 | a.4.1 | Homeodomain-like |
| View | Download | 0.215 | a.1.1 | Globin-like |
| View | Download | 0.215 | a.1.1 | Globin-like |
| View | Download | 0.212 | d.55.1 | Ribosomal protein L22 |
| View | Download | 0.208 | a.1.1 | Globin-like |
| View | Download | 0.208 | a.77.1 | DEATH domain |
| View | Download | 0.206 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.202 | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.202 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.201 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.201 | c.30.1 | PreATP-grasp domain |
