| Protein: | GYP5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 894 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GYP5.
| Description | E-value | Query Range |
Subject Range |
|
|
443.0 | [0..1] | [707..124] |
|
Region A: Residues: [1-412] |
1 11 21 31 41 51
| | | | | |
1 MSSDKSIEKN TDTIASEVHE GDNHSNNLGS MEEEIKSTPS DQYEEIAIIP TEPLHSDKEL 60
61 NDKQQSLGHE APTNVSREEP IGISGDEDTQ ITEQNVNEQR QETREPSSEI DLNEPLDVEK 120
121 DVTTDVQAPN GLNIEKEYDA VKENEKVYAD TKEVVSSPEN REVTGKNSGG EKSSSSKFLD 180
181 DESGTTTAAN ANDISISSEV TPERSSENDN NQIHITNEVA AGINLNENKE QKAAIEDGPV 240
241 TAENLSSETA RKVPPIPTQI INEKGDNSSE NEVSAIPTTS SPPLPPRQNV ATSTSPKLPP 300
301 RGKQREQPPK TKNAVPPPLE EEMKSEKFRK NFEETKRNSY HHVPLTGSKT AQLESTAEIN 360
361 LIASRYRKTS HHLNKEGEET RESLQEGQSF LKSTFTSFLE NLSEYNEVEN VN
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [413-637] |
1 11 21 31 41 51
| | | | | |
1 EEDREMFKID WSFWTQVVND YATVASNEPE NLEAHVTNGI PPQIRGIIWQ LMANSKSREM 60
61 EDIYETLLDT ECLHEATIRR DLRRTKFVAE DKMESLYKVI KVYSVYDPDV GYTQGMGFIA 120
121 APLLINCENE AESFGLLVGL MKNYGLRELF LPGMPGLMLM LYQFDRLLEE HSPSLYNRLI 180
181 REGISSTMYA TQWFLTFFAY KFPLEFVLRI FDIVFVEGIE VLLKF
|
| Detection Method: | |
| Confidence: | 36.221849 |
| Match: | 1fkmA_ |
| Description: | Ypt/Rab-GAP domain of gyp1p |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [638-813] |
1 11 21 31 41 51
| | | | | |
1 AVNLMLKNEE TLVKLRFDEL LDFLKDELFN YYLMGNQDDA SVVQMGLSNG NSFKGNDDGT 60
61 FSYNVDLFVH DAMTGVYITP LTLRRYRGEY VEIHEKEQKK EDHYESLRIQ NHQLQREAQK 120
121 LEHDYSILNK ENISAANELI QNRLNMEMLL DEKNDLINTI TDIKSQIEEE IRKQNL
|
| Detection Method: | |
| Confidence: | 22.69897 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [814-894] |
1 11 21 31 41 51
| | | | | |
1 PNPDASLPKA DLREDLERTI SRNNEVMREN GQLEERITEL QAEIDELINI NKEQVSTASL 60
61 LERDSKAKGR KGWTGFKKVF K
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
