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View Structure Prediction Details

Protein: RPL7B
Organism: Saccharomyces cerevisiae
Length: 244 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL7B.

Description E-value Query
Range
Subject
Range
gi|76779245 - gi|76779245|gb|AAI06057.1| RPL7 protein [Homo sapiens]
352.0 [0..2] [244..78]
gi|114620484 - gi|114620484|ref|XP_519807.2| PREDICTED: similar to ribosomal protein L7 [Pan troglodytes]
346.0 [0..2] [244..32]
gi|94374880, gi|... - gi|94376419|ref|XP_979735.1| PREDICTED: similar to 60S ribosomal protein L7 [Mus musculus], gi|94374...
340.0 [0..1] [244..56]
gi|73999236 - gi|73999236|ref|XP_535102.2| PREDICTED: similar to 60S ribosomal protein L7 isoform 1 [Canis familia...
340.0 [0..2] [244..18]
gi|109086742 - gi|109086742|ref|XP_001086568.1| PREDICTED: similar to 60S ribosomal protein L7 [Macaca mulatta]
337.0 [0..3] [223..262]
RL7_PONAB - 60S ribosomal protein L7 OS=Pongo abelii GN=RPL7 PE=2 SV=1
RL7_PONPY - 60S ribosomal protein L7 - Pongo pygmaeus (Orangutan)
336.0 [0..2] [244..7]
RL7_MACFA - 60S ribosomal protein L7 OS=Macaca fascicularis GN=RPL7 PE=2 SV=1
335.0 [0..2] [244..7]

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Predicted Domain #1
Region A:
Residues: [1-78]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTEKILTPE SQLKKTKAQQ KTAEQIAAER AARKAANKEK RAIILERNAA YQKEYETAER  60
   61 NIIQAKRDAK AAGSYYVE

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 26.677781
Match: PF08079.3
Description: No description for PF08079.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.971 N/A N/A a.2.15 Description not found.

Predicted Domain #2
Region A:
Residues: [79-244]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AQHKLVFVVR IKGINKIPPK PRKVLQLLRL TRINSGTFVK VTKATLELLK LIEPYVAYGY  60
   61 PSYSTIRQLV YKRGFGKINK QRVPLSDNAI IEANLGKYGI LSIDDLIHEI ITVGPHFKQA 120
  121 NNFLWPFKLS NPSGGWGVPR KFKHFIQGGS FGNREEFINK LVKAMN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 56.522879
Match: 1s1iF
Description: Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle