YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL7B
Organism:	Saccharomyces cerevisiae
Length:	244 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL7B.

Description	E-value	Query Range	Subject Range
gi\|76779245 - gi\|76779245\|gb\|AAI06057.1\| RPL7 protein [Homo sapiens]	352.0	[0..2]	[244..78]
gi\|114620484 - gi\|114620484\|ref\|XP_519807.2\| PREDICTED: similar to ribosomal protein L7 [Pan troglodytes]	346.0	[0..2]	[244..32]
gi\|94374880, gi\|... - gi\|94376419\|ref\|XP_979735.1\| PREDICTED: similar to 60S ribosomal protein L7 [Mus musculus], gi\|94374...	340.0	[0..1]	[244..56]
gi\|73999236 - gi\|73999236\|ref\|XP_535102.2\| PREDICTED: similar to 60S ribosomal protein L7 isoform 1 [Canis familia...	340.0	[0..2]	[244..18]
gi\|109086742 - gi\|109086742\|ref\|XP_001086568.1\| PREDICTED: similar to 60S ribosomal protein L7 [Macaca mulatta]	337.0	[0..3]	[223..262]
RL7_PONAB - 60S ribosomal protein L7 OS=Pongo abelii GN=RPL7 PE=2 SV=1 RL7_PONPY - 60S ribosomal protein L7 - Pongo pygmaeus (Orangutan)	336.0	[0..2]	[244..7]
RL7_MACFA - 60S ribosomal protein L7 OS=Macaca fascicularis GN=RPL7 PE=2 SV=1	335.0	[0..2]	[244..7]

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Predicted Domain #1

Region A:
Residues: [1-78]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTEKILTPE SQLKKTKAQQ KTAEQIAAER AARKAANKEK RAIILERNAA YQKEYETAER  60
   61 NIIQAKRDAK AAGSYYVE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	26.677781
Match:	PF08079.3
Description:	No description for PF08079.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.971	N/A	N/A	a.2.15	Description not found.
View	Download	0.969	N/A	N/A	a.2.15	Description not found.
View	Download	0.965	N/A	N/A	a.2.15	Description not found.
View	Download	0.953	N/A	N/A	a.47.2	t-snare proteins
View	Download	0.950	N/A	N/A	a.2.15	Description not found.
View	Download	0.770	N/A	N/A	a.47.2	t-snare proteins

Predicted Domain #2

Region A:
Residues: [79-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AQHKLVFVVR IKGINKIPPK PRKVLQLLRL TRINSGTFVK VTKATLELLK LIEPYVAYGY  60
   61 PSYSTIRQLV YKRGFGKINK QRVPLSDNAI IEANLGKYGI LSIDDLIHEI ITVGPHFKQA 120
  121 NNFLWPFKLS NPSGGWGVPR KFKHFIQGGS FGNREEFINK LVKAMN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.522879
Match:	1s1iF
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits