| Protein: | APL5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 932 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APL5.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..932] | [1..932] |
|
|
0.0 | [19..899] | [10..829] |
|
|
0.0 | [19..898] | [10..832] |
|
|
0.0 | [13..896] | [5..866] |
|
|
0.0 | [19..900] | [6..830] |
|
Region A: Residues: [1-94] |
1 11 21 31 41 51
| | | | | |
1 MTSLYAPGAE DIRQRLRPFG FFFEKSLKDL IKGIRSHNET PEKLDQFFKQ VLSECREEVN 60
61 SPDLNSKTNA VLKLTYLEMY GFDMAWCNFH ILEV
|
| Detection Method: |  |
| Confidence: | 265.751666 |
| Match: | 1gw5A_ |
| Description: | Adaptin alpha C subunit N-terminal fragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [95-266] |
1 11 21 31 41 51
| | | | | |
1 MSSNKLQQKR VGYLAASQSF YKDSDILMLA TNLLKKDLKY DGNNDVVKVG IALSGLSTII 60
61 TPSLARDIAD DLFTMLNSTR PYIRKKAITA LFKVFLQYPE ALRDNFDKFV SKLDDDDISV 120
121 VSAAVSVICE LSKKNPQPFI QLSPLLYEIL VTIDNNWIII RLLKLFTNLS QV
|
| Detection Method: | |
| Confidence: | 71.30103 |
| Match: | 1b3uA_ |
| Description: | Constant regulatory domain of protein phosphatase 2a, pr65alpha |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [267-330] |
1 11 21 31 41 51
| | | | | |
1 EPKLRAKLLP KILELMESTV ATSVIYESVN CIVKGNMLEE DDFETAMACL ERLHTFCDSQ 60
61 DPNL
|
| Detection Method: | |
| Confidence: | 71.30103 |
| Match: | 1b3uA_ |
| Description: | Constant regulatory domain of protein phosphatase 2a, pr65alpha |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [331-502] |
1 11 21 31 41 51
| | | | | |
1 RYISCILFYK IGKINTDFIS RFDQLIIRLL SDVDVSIRSK AIELVEGIVD EDNLKAIVQT 60
61 LMKQFVDEDV VILQTGSIVY EKSKRIPIII PENYKIKMVN VIISICSADN YSSVNDFEWY 120
121 NAVIMDLAML CQDISDKSLG SKIGEQFRNL MIKVPSMREV TIANIIKLIS ND
|
| Detection Method: | |
| Confidence: | 71.30103 |
| Match: | 1b3uA_ |
| Description: | Constant regulatory domain of protein phosphatase 2a, pr65alpha |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [503-653] |
1 11 21 31 41 51
| | | | | |
1 NINKQLPTVL RECIWCLGEF STLVENGNDL IKIMTENISY YSHSVQEVLI LALVKVFSNW 60
61 CNNFQEDKRF EIKMVLKELI EFFENLSYSS TFEVQERSVE VLEFLRLSLE ALEEDTEGLP 120
121 MLLSEVLPSF FNAYELAPIA RGTQLKLAVD E
|
| Detection Method: | |
| Confidence: | 71.30103 |
| Match: | 1b3uA_ |
| Description: | Constant regulatory domain of protein phosphatase 2a, pr65alpha |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [654-712] |
1 11 21 31 41 51
| | | | | |
1 NLDLETPFLT KEAADELLDE QKSDAISDLM SDISMDEQVE LKFVDDSDTS YEEKEKLDD
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.575 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.498 | a.4.1 | Homeodomain-like |
| View | Download | 0.406 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.528 | a.112.1 | Description not found. |
| View | Download | 0.437 | a.4.1 | Homeodomain-like |
| View | Download | 0.399 | d.47.1 | Ribosomal protein L11, N-terminal domain |
| View | Download | 0.364 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.351 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.343 | a.4.1 | Homeodomain-like |
| View | Download | 0.314 | a.161.1 | beta-catenin-interacting protein ICAT |
| View | Download | 0.299 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.296 | a.65.1 | Annexin |
| View | Download | 0.279 | g.57.1 | Serine proteinase inhibitor lekti |
| View | Download | 0.274 | a.4.1 | Homeodomain-like |
| View | Download | 0.270 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.269 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.252 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.226 | a.76.1 | Iron-dependent represor protein, dimerization domain |
|
Region A: Residues: [713-932] |
1 11 21 31 41 51
| | | | | |
1 FENPFEIERE KERMSNPYYL GEEDEERTKN SKDLLDLNEE ESSDKKPETI RLNRTDNSLN 60
61 SLSLSTTEIS RKKKKGKKKN RVQVLSDEPV IEAAPKRKDA FQKPHDNHST QNPLKKDKIN 120
121 LRMHSQLENF DFSNFGQSSN AGRGSQEEGN LRKEDELELS RLEANLIVKD EKDNLSDTEE 180
181 VIVIKKKKKG KKSKSKNKLK TKAKNSPEPN EFLRDQSTDI
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
