| Protein: | PRM4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 284 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRM4.
| Description | E-value | Query Range |
Subject Range |
|
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3.0E-67 | [1..284] | [1..284] |
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9.0E-35 | [50..269] | [53..253] |
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2.0E-34 | [48..267] | [50..248] |
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1.0E-32 | [47..265] | [49..242] |
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2.0E-31 | [55..280] | [37..252] |
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4.0E-30 | [110..277] | [4..149] |
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1.0E-28 | [158..272] | [4..103] |
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6.0E-28 | [158..276] | [4..107] |
|
Region A: Residues: [1-118] |
1 11 21 31 41 51
| | | | | |
1 MIADSSVLKK HTAIKRSTRI ISLTLVLLGV FSFLLLTWND SLEFYNSADP SENKKNSEEE 60
61 SEKKFVYKLP NLLKTADSFL SNENELNFQK VKEEISNIQS EVEVDIPEPS SKATSKFS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.535 | a.24.3 | Cytochromes |
| View | Download | 0.345 | a.69.3 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain |
| View | Download | 0.535 | a.24.3 | Cytochromes |
| View | Download | 0.488 | a.24.3 | Cytochromes |
| View | Download | 0.488 | a.24.3 | Cytochromes |
| View | Download | 0.390 | a.24.3 | Cytochromes |
| View | Download | 0.345 | a.69.3 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain |
| View | Download | 0.321 | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| View | Download | 0.321 | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| View | Download | 0.303 | a.46.1 | Methionine synthase domain |
| View | Download | 0.303 | a.63.1 | Apolipophorin-III |
| View | Download | 0.301 | a.24.4 | Hemerythrin |
| View | Download | 0.292 | a.47.2 | t-snare proteins |
| View | Download | 0.290 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.284 | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.251 | i.11.1 | Computational models partly based on NMR data |
| View | Download | 0.247 | a.151.1 | Glutamyl tRNA-reductase dimerization domain |
| View | Download | 0.244 | a.90.1 | Transcription factor STAT-4 N-domain |
| View | Download | 0.242 | a.2.5 | Prefoldin |
| View | Download | 0.223 | f.18.1 | F1F0 ATP synthase subunit A |
| View | Download | 0.217 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.216 | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.212 | a.1.1 | Globin-like |
| View | Download | 0.210 | a.26.1 | 4-helical cytokines |
| View | Download | 0.208 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.207 | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.206 | a.4.5 | "Winged helix" DNA-binding domain |
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Region A: Residues: [119-284] |
1 11 21 31 41 51
| | | | | |
1 SRSFQTDNVV TATTTTTLNP RSSSLALQKN CDHKKFDPRT DFLDIIRTSP AVLFIKSSQA 60
61 DSIFLKNLLQ REFEISPELA TVDLEKHSHG YELEKYIKQN KLNIDTSAAL ESIQSPYLFL 120
121 NGISVINRGM VRDIIEPHSK GLLLPLLKSE ARGNLLVEKK DIPSNS
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| Detection Method: | |
| Confidence: | 25.154902 |
| Match: | 1jhb__ |
| Description: | Glutaredoxin (Grx, thioltransferase) |
Matching Structure (courtesy of the PDB): |
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