| Protein: | HHO1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 258 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HHO1.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-24 | [38..199] | [163..319] |
|
|
2.0E-23 | [1..258] | [1..258] |
|
|
9.0E-23 | [38..164] | [433..556] |
|
Region A: Residues: [1-142] |
1 11 21 31 41 51
| | | | | |
1 MAPKKSTTKT TSKGKKPATS KGKEKSTSKA AIKKTTAKKE EASSKSYREL IIEGLTALKE 60
61 RKGSSRPALK KFIKENYPIV GSASNFDLYF NNAIKKGVEA GDFEQPKGPA GAVKLAKKKS 120
121 PEVKKEKEVS PKPKQAATSV SA
|
| Detection Method: |  |
| Confidence: | 14.0 |
| Match: | 1hstA_ |
| Description: | Histone H5, globular domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.835523092977445 | bayes_pls_golite062009 |
| transcription regulator activity | 0.4843036104266 | bayes_pls_golite062009 |
| nucleic acid binding | 0.37117756729668 | bayes_pls_golite062009 |
| DNA binding | 0.3118855114645 | bayes_pls_golite062009 |
|
Region A: Residues: [143-258] |
1 11 21 31 41 51
| | | | | |
1 TASKAKAAST KLAPKKVVKK KSPTVTAKKA SSPSSLTYKE MILKSMPQLN DGKGSSRIVL 60
61 KKYVKDTFSS KLKTSSNFDY LFNSAIKKCV ENGELVQPKG PSGIIKLNKK KVKLST
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 0.835523092977445 | bayes_pls_golite062009 |
| transcription regulator activity | 0.4843036104266 | bayes_pls_golite062009 |
| nucleic acid binding | 0.37117756729668 | bayes_pls_golite062009 |
| DNA binding | 0.3118855114645 | bayes_pls_golite062009 |
