| Protein: | VPS30 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 557 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS30.
| Description | E-value | Query Range |
Subject Range |
|
|
335.0 | [0..1] | [557..1] |
|
|
318.0 | [0..53] | [540..24] |
|
|
315.0 | [0..153] | [552..149] |
|
|
309.0 | [0..146] | [548..136] |
|
|
309.0 | [0..153] | [552..149] |
|
|
299.0 | [0..147] | [544..126] |
|
|
298.0 | [0..161] | [544..145] |
|
|
298.0 | [0..147] | [544..145] |
|
|
295.0 | [0..147] | [544..146] |
|
Region A: Residues: [1-339] |
1 11 21 31 41 51
| | | | | |
1 MKCQTCHLPL QLDPSLEGLS LTQRNLLLSN NSIITATNEN VISNKGIEAA DNCGPQIPKE 60
61 RLRRLGEIQN IKDLNLKDDK LITDSFVFLN HDDDDNANIT SNSREDQRYG NANGNDNKKA 120
121 NSDTSDGTST FRDHDEEEQE ATDEDENQQI QLNSKTLSTQ VNAMTNVFNI LSSQTNIDFP 180
181 ICQDCCNILI NRLKSEYDDA IKERDTYAQF LSKLESQNKE ISESNKEKQY SHNLSEKENL 240
241 KKEEERLLDQ LLRLEMTDDD LDGELVRLQE KKVQLENEKL QKLSDQNLMD LNNIQFNKNL 300
301 QSLKLQYELS LNQLDKLRKI NIFNATFKIS HSGPFATIN
|
| Detection Method: |  |
| Confidence: | 32.39794 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [340-464] |
1 11 21 31 41 51
| | | | | |
1 GLRLGSIPES VVPWKEINAA LGQLILLLAT INKNLKINLV DYELQPMGSF SKIKKRMVNS 60
61 VEYNNSTTNA PGDWLILPVY YDENFNLGRI FRKETKFDKS LETTLEIISE ITRQLSTIAS 120
121 SYSSQ
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.729 | N/A | N/A | a.60.8 | HRDC-like |
| View | Download | 0.580 | N/A | N/A | a.60.8 | HRDC-like |
| View | Download | 0.467 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.464 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.404 | N/A | N/A | a.29.16 | Description not found. |
| View | Download | 0.386 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.357 | N/A | N/A | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.336 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.333 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.287 | N/A | N/A | d.185.1 | LuxS/MPP-like metallohydrolase |
|
Region A: Residues: [465-557] |
1 11 21 31 41 51
| | | | | |
1 TLTTSQDESS MNNANDVENS TSILELPYIM NKDKINGLSV KLHGSSPNLE WTTAMKFLLT 60
61 NVKWLLAFSS NLLSKSITLS PTVNYNDKTI SGN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.785 | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.748 | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.746 | d.58.21 | Molybdenum cofactor biosynthesis protein C, MoaC |
| View | Download | 0.746 | d.58.21 | Molybdenum cofactor biosynthesis protein C, MoaC |
| View | Download | 0.730 | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.726 | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.692 | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.673 | a.77.1 | DEATH domain |
| View | Download | 0.581 | a.77.1 | DEATH domain |
| View | Download | 0.568 | d.52.7 | Ribosome-binding factor A, RbfA |
