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View Structure Prediction Details

Protein: PEX25
Organism: Saccharomyces cerevisiae
Length: 394 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PEX25.

Description E-value Query
Range
Subject
Range
PEX25 - Peripheral peroxisomal membrane peroxin required for the regulation of peroxisome size and maintenan...
gi|190407844 - gi|190407844|gb|EDV11109.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
PEX25_YEAST - Peroxisomal membrane protein PEX25 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PEX25...
0.0 [1..394] [1..394]

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Predicted Domain #1
Region A:
Residues: [1-84]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQFGTTDIV SGSETPPYSG ASYQDAQDDN THPHSSDAGA EKFSAGSGSE SHTESSRSDD  60
   61 EDSQAKTKMV DNITILKYIL DSLS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [85-394]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRDKLAKIIK YALDILKLFI EKSKRNLTVL DPSVLTYYTK ILKNLTVKVA LRHPITVIKV  60
   61 LLLSLLRNFD KKIDFISQQL STFRYILRFG GTPFRVCSFL GKFNKTRKCN FQIDQIKKIW 120
  121 FNEASLREFL DLYYGIFDEL DLLYKLKIWT NKSFYSFVSR QESLAWQYDI LLSLKDHWLN 180
  181 LQSLQKRQLE LEVQLKVQNN ALLLSPILMH QAHKDDGSQS PIRKQLLNDL NVNNDAEVLI 240
  241 HKQLKAIKDE KTLVYLDIAR LSFDCMANTS DILNLKTPKG TYAVLSLGSG LTGLVKLWIT 300
  301 TKRSLCSSKD 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle