| Protein: | RLM1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 676 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLM1.
| Description | E-value | Query Range |
Subject Range |
|
|
388.0 | [0..1] | [440..1] |
|
|
379.0 | [0..1] | [430..1] |
|
|
377.0 | [0..1] | [430..1] |
|
|
375.0 | [0..1] | [430..1] |
|
Region A: Residues: [1-80] |
1 11 21 31 41 51
| | | | | |
1 MGRRKIEIQR ISDDRNRAVT FIKRKAGLFK KAHELSVLCQ VDIAVIILGS NNTFYEFSSV 60
61 DTNDLIYHYQ NDKNLLHEVK
|
| Detection Method: |  |
| Confidence: | 201.228787 |
| Match: | 1egwA |
| Description: | Mef2a core |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [81-260] |
1 11 21 31 41 51
| | | | | |
1 DPSDYGDFHK SASVNINQDL LRSSMSNKPS KSNVKGMNQS ENDDDENNDE DDDDHGNFER 60
61 NSNMHSNKKA SDKNIPSAHM KLLSPTALIS KMDGSEQNKR HPENALPPLQ HLKRLKPDPL 120
121 QISRTPQQQQ QQNISRPYHS SMYNLNQPSS SSSSPSTMDF PKLPSFQNSS FNGRPPPISI 180
181
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [261-449] |
1 11 21 31 41 51
| | | | | |
1 SPNKFSKPFT NASSRTPKQE HKINNSGSNN NDNSNYTQSP SNSLEDSIQQ TVKARRKLSA 60
61 RPVLRVRIPN NNFSSNSAIP SEPSSASSTS ANGNSMGSSQ IMKENKTSRS SKISPLSASA 120
121 SGPLTLQKGN NGRMVIKLPN ANAPNGSNNG NGSNNNNHPY PFGSGSSPLF SATQPYIATP 180
181 LQPSNIPGG
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [450-531] |
1 11 21 31 41 51
| | | | | |
1 PFQQNTSFLA QRQTQQYQQM SFKKQSQTVP LTTTLTGRPP STFSGPETSN GPPTGSLPSK 60
61 FVHDLMSNSP NVSSISMFPD WS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [532-676] |
1 11 21 31 41 51
| | | | | |
1 MGPNSAKPGN TNNPGTFPPV QTAVNNGNSS NISSTNNTNN NNNNNNNNSS NNNSNNGNDN 60
61 NSNNSNNSYY SNNEDAPVNG AAISEHTTDG DSNNQSNSST YDAAATAYNG NTGLTPYINT 120
121 AQTPLGTKFF NFSTDISGEK NSSKI
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
