| Protein: | RLM1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 676 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLM1.
| Description | E-value | Query Range |
Subject Range |
|
|
388.0 | [0..1] | [440..1] |
|
|
379.0 | [0..1] | [430..1] |
|
|
377.0 | [0..1] | [430..1] |
|
|
375.0 | [0..1] | [430..1] |
|
Region A: Residues: [1-80] |
1 11 21 31 41 51
| | | | | |
1 MGRRKIEIQR ISDDRNRAVT FIKRKAGLFK KAHELSVLCQ VDIAVIILGS NNTFYEFSSV 60
61 DTNDLIYHYQ NDKNLLHEVK
|
| Detection Method: |  |
| Confidence: | 201.228787 |
| Match: | 1egwA |
| Description: | Mef2a core |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [81-260] |
1 11 21 31 41 51
| | | | | |
1 DPSDYGDFHK SASVNINQDL LRSSMSNKPS KSNVKGMNQS ENDDDENNDE DDDDHGNFER 60
61 NSNMHSNKKA SDKNIPSAHM KLLSPTALIS KMDGSEQNKR HPENALPPLQ HLKRLKPDPL 120
121 QISRTPQQQQ QQNISRPYHS SMYNLNQPSS SSSSPSTMDF PKLPSFQNSS FNGRPPPISI 180
181
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [261-449] |
1 11 21 31 41 51
| | | | | |
1 SPNKFSKPFT NASSRTPKQE HKINNSGSNN NDNSNYTQSP SNSLEDSIQQ TVKARRKLSA 60
61 RPVLRVRIPN NNFSSNSAIP SEPSSASSTS ANGNSMGSSQ IMKENKTSRS SKISPLSASA 120
121 SGPLTLQKGN NGRMVIKLPN ANAPNGSNNG NGSNNNNHPY PFGSGSSPLF SATQPYIATP 180
181 LQPSNIPGG
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [450-531] |
1 11 21 31 41 51
| | | | | |
1 PFQQNTSFLA QRQTQQYQQM SFKKQSQTVP LTTTLTGRPP STFSGPETSN GPPTGSLPSK 60
61 FVHDLMSNSP NVSSISMFPD WS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.653 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.653 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.514 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.456 | a.150.1 | Anti-sigma factor AsiA |
| View | Download | 0.411 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.404 | a.64.1 | Saposin |
| View | Download | 0.328 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.314 | a.60.8 | HRDC-like |
| View | Download | 0.301 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
|
Region A: Residues: [532-676] |
1 11 21 31 41 51
| | | | | |
1 MGPNSAKPGN TNNPGTFPPV QTAVNNGNSS NISSTNNTNN NNNNNNNNSS NNNSNNGNDN 60
61 NSNNSNNSYY SNNEDAPVNG AAISEHTTDG DSNNQSNSST YDAAATAYNG NTGLTPYINT 120
121 AQTPLGTKFF NFSTDISGEK NSSKI
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.326 | N/A | N/A | a.98.1 | R1 subunit of ribonucleotide reductase, N-terminal domain |
| View | Download | 0.298 | N/A | N/A | c.46.1 | Rhodanese/Cell cycle control phosphatase |
| View | Download | 0.283 | N/A | N/A | d.116.1 | Hypothetical protein HI1434 (YbaK homologue) |
| View | Download | 0.267 | N/A | N/A | a.3.1 | Cytochrome c |
| View | Download | 0.245 | N/A | N/A | b.82.3 | cAMP-binding domain-like |
| View | Download | 0.240 | N/A | N/A | a.118.12 | Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |
