| Protein: | SEN54 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 467 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SEN54.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..467] | [1..467] |
|
|
0.0 | [9..342] | [2..318] |
|
|
4.0E-96 | [18..451] | [34..506] |
|
|
7.0E-57 | [33..202] | [22..178] |
|
|
3.0E-54 | [33..290] | [18..243] |
|
|
6.0E-43 | [19..335] | [4..354] |
|
|
1.0E-38 | [86..317] | [38..193] |
|
Region A: Residues: [1-381] |
1 11 21 31 41 51
| | | | | |
1 MQFAGKKTDQ VTTSNPGFEE EEEEEEELQQ DWSQLASLVS KNAALSLPKR GEKDYEPDGT 60
61 NLQDLLLYNA SKAMFDTISD SIRGTTVKSE VRGYYVPHKH QAVLLKPKGS FMQTMGRADS 120
121 TGELWLDFHE FVYLAERGTI LPYYRLEAGS NKSSKHETEI LLSMEDLYSL FSSQQEMDQY 180
181 FVFAHLKRLG FILKPSNQEA AVKTSFFPLK KQRSNLQAIT WRLLSLFKIQ ELSLFSGFFY 240
241 SKWNFFFRKY TTSPQLYQGL NRLVRSVAVP KNKKELLDAQ SDREFQKVKD IPLTFKVWKP 300
301 HSNFKKRDPG LPDFQVFVYN KNDDLQHFPT YKELRSMFSS LDYKFEFLSE IEDDDDWETN 360
361 SYVEDIPRKE YIHKRSAKSQ T
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.462 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.371 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.282 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.271 | N/A | N/A | d.141.1 | Ribosomal protein L6 |
| View | Download | 0.268 | N/A | N/A | a.142.1 | PTS-regulatory domain, PRD |
|
Region A: Residues: [382-467] |
1 11 21 31 41 51
| | | | | |
1 EKSESSMKAS FQKKTAQSST KKKRKAYPPH IQQNRRLKTG YRSFIIAIMD NGLISFVKMS 60
61 EADFGSESVW YTPNTQKKVD QRWKKH
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.538 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.652 | d.95.2 | Homing endonucleases |
| View | Download | 0.582 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.509 | d.52.1 | Alpha-lytic protease prodomain |
| View | Download | 0.461 | a.59.1 | PAH2 domain |
| View | Download | 0.438 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.416 | d.88.1 | SRF-like |
| View | Download | 0.411 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.385 | g.14.1 | Kringle-like |
| View | Download | 0.373 | b.7.2 | Periplasmic chaperone C-domain |
| View | Download | 0.359 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.322 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.312 | d.122.1 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |
| View | Download | 0.306 | a.47.2 | t-snare proteins |
| View | Download | 0.296 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.270 | d.150.1 | 4'-phosphopantetheinyl transferase |
| View | Download | 0.270 | d.79.2 | Tubulin/Dihydroxyacetone kinase C-terminal domain |
| View | Download | 0.266 | d.79.2 | Tubulin/Dihydroxyacetone kinase C-terminal domain |
| View | Download | 0.250 | d.95.2 | Homing endonucleases |
| View | Download | 0.245 | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.226 | f.28.1 | Nonheme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.216 | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.212 | d.81.1 | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |
| View | Download | 0.203 | a.60.7 | 5' to 3' exonuclease, C-terminal subdomain |
|
Region A: Residues: [207-328] |
1 11 21 31 41 51
| | | | | |
1 FPLKKQRSNL QAITWRLLSL FKIQELSLFS GFFYSKWNFF FRKYTTSPQL YQGLNRLVRS 60
61 VAVPKNKKEL LDAQSDREFQ KVKDIPLTFK VWKPHSNFKK RDPGLPDFQV FVYNKNDDLQ 120
121 HF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.417 | c.3.1 | FAD/NAD(P)-binding domain |
| View | Download | 0.416 | a.118.8 | TPR-like |
| View | Download | 0.380 | a.118.12 | Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |
| View | Download | 0.329 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.280 | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
|
Region A: Residues: [329-467] |
1 11 21 31 41 51
| | | | | |
1 PTYKELRSMF SSLDYKFEFL SEIEDDDDWE TNSYVEDIPR KEYIHKRSAK SQTEKSESSM 60
61 KASFQKKTAQ SSTKKKRKAY PPHIQQNRRL KTGYRSFIIA IMDNGLISFV KMSEADFGSE 120
121 SVWYTPNTQK KVDQRWKKH
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.661 | d.95.2 | Homing endonucleases |
| View | Download | 0.652 | d.95.2 | Homing endonucleases |
| View | Download | 0.587 | d.95.2 | Homing endonucleases |
| View | Download | 0.582 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.542 | d.95.2 | Homing endonucleases |
