YRC Public Data Repository - Protein Structure Prediction

Protein:	YPL077C
Organism:	Saccharomyces cerevisiae
Length:	240 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPL077C.

Description	E-value	Query Range	Subject Range
YP077_YEAST - Uncharacterized protein YPL077C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPL077C ... YPL077C - Putative protein of unknown function; regulates PIS1 expression; mutant displays spore wall assembly... gi\|151942719 - gi\|151942719\|gb\|EDN61065.1\| conserved protein [Saccharomyces cerevisiae YJM789] gi\|207340537 - gi\|207340537\|gb\|EDZ68860.1\| YPL077Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190407876 - gi\|190407876\|gb\|EDV11141.1\| hypothetical protein SCRG_02417 [Saccharomyces cerevisiae RM11-1a]	0.0	[1..240]	[1..240]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDLQKKSSV RRQITNEDDE RYGEDSIHDL PRTIPNVNPY IRNSGFRPSY SSQIPSTRSL  60
   61 FNNYYNRSSA NTVGNDTIDT DSVSYNGVAK FRRNSVDIPL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [101-240]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QTHNRLEVRP IIDRQDYLWR EIDALDDVKR QAQATELYDQ FPPGFENKLM QLRQAHSKLL  60
   61 QVLRDRNAKI EEEQRREVAV ATAAAMMTRT PSPTGKSVGD EATSNNMHSS SAIRNPNGPT 120
  121 VDPEEGKYIQ ELVNTIRELQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits