| Protein: | CAM1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 415 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAM1.
| Description | E-value | Query Range |
Subject Range |
|
|
557.0 | [0..1] | [415..187] |
|
Region A: Residues: [1-223] |
1 11 21 31 41 51
| | | | | |
1 MSQGTLYANF RIRTWVPRGL VKALKLDVKV VTPDAAAEQF ARDFPLKKVP AFVGPKGYKL 60
61 TEAMAINYYL VKLSQDDKMK TQLLGADDDL NAQAQIIRWQ SLANSDLCIQ IANTIVPLKG 120
121 GAPYNKKSVD SAMDAVDKIV DIFENRLKNY TYLATENISL ADLVAASIFT RYFESLFGTE 180
181 WRAQHPAIVR WFNTVRASPF LKDEYKDFKF ADKPLSPPQK KKE
|
| Detection Method: |  |
| Confidence: | 40.69897 |
| Match: | 1nhyA |
| Description: | GST-like domain of elongation factor 1-gamma |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 2.30799114442278 | bayes_pls_golite062009 |
| nucleic acid binding | 2.06381591939564 | bayes_pls_golite062009 |
| DNA binding | 1.92118545500784 | bayes_pls_golite062009 |
| binding | 1.25802922431343 | bayes_pls_golite062009 |
| transcription activator activity | 1.23146660729357 | bayes_pls_golite062009 |
| protein binding | 1.18479617596618 | bayes_pls_golite062009 |
| catalytic activity | 0.672192331361968 | bayes_pls_golite062009 |
| RNA binding | 0.382017633056715 | bayes_pls_golite062009 |
| 0.359224524631956 | bayes_pls_golite062009 | |
| receptor binding | 0.0497559408754589 | bayes_pls_golite062009 |
|
Region A: Residues: [224-415] |
1 11 21 31 41 51
| | | | | |
1 KKAPAAAPAA SKKKEEAKPA ATETETSSKK PKHPLELLGK STFVLDDWKR KYSNEDTRPV 60
61 ALPWFWEHYN PEEYSLWKVT YKYNDELTLT FMSNNLVGGF FNRLSASTKY MFGCLVVYGE 120
121 NNNNGIVGAV MVRGQDYVPA FDVAPDWESY DYAKLDPTND DDKEFINNMW AWDKPVSVNG 180
181 EPKEIVDGKV LK
|
| Detection Method: | |
| Confidence: | 77.0 |
| Match: | 1pbuA |
| Description: | Elongation factor 1-gamma C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| translation elongation factor activity | 11.9602302019768 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 7.4644014407268 | bayes_pls_golite062009 |
| translation regulator activity | 7.42485540728491 | bayes_pls_golite062009 |
| nucleic acid binding | 3.9329721501879 | bayes_pls_golite062009 |
| binding | 3.0325775548747 | bayes_pls_golite062009 |
| protein binding | 1.65598815428763 | bayes_pls_golite062009 |
