| Protein: | NOP4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 685 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NOP4.
| Description | E-value | Query Range |
Subject Range |
|
|
434.0 | [0..1] | [685..1] |
|
|
415.0 | [0..280] | [685..1] |
|
|
413.0 | [0..280] | [685..1] |
|
|
413.0 | [0..280] | [685..1] |
|
Region A: Residues: [1-123] |
1 11 21 31 41 51
| | | | | |
1 MEETIENVEV PSSNVSKQND DGLDMKTLFV RSIPQDVTDE QLADFFSNFA PIKHAVVVKD 60
61 TNKRSRGFGF VSFAVEDDTK EALAKARKTK FNGHILRVDI AKRRDRSKKT SEVVEKSTPE 120
121 SSE
|
| Detection Method: |  |
| Confidence: | 93.264245 |
| Match: | 1l3kA |
| Description: | Nuclear ribonucleoprotein A1 (RNP A1, UP1) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [124-255] |
1 11 21 31 41 51
| | | | | |
1 KITGQNNEDE DDADGEDSML KGKPKLIIRN MPWSCRDPVK LKKIFGRYGT VVEATIPRKR 60
61 DGKLCGFAFV TMKKISNCRI ALENTKDLKI DGRKVAVDFA VQKNRWEDYK KAQPEMNDKD 120
121 DNESGNEDAE EN
|
| Detection Method: | |
| Confidence: | 93.264245 |
| Match: | 1l3kA |
| Description: | Nuclear ribonucleoprotein A1 (RNP A1, UP1) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [256-383] |
1 11 21 31 41 51
| | | | | |
1 HDDEEDENEE EDRQVDQASK NKESKRKAQN KREDFSVFVR NVPYDATEES LAPHFSKFGS 60
61 VKYALPVIDK STGLAKGTAF VAFKDQYTYN ECIKNAPAAG STSLLIGDDV MPEYVYEGRV 120
121 LSITPTLV
|
| Detection Method: | |
| Confidence: | 76.927757 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [384-500] |
1 11 21 31 41 51
| | | | | |
1 REDAGRMAEK NAAKRKEALG KAPGEKDRRN LYLLNEGRVV EGSKMADLLT NTDMEIREKS 60
61 YKLRVEQLKK NPSLHLSMTR LAIRNLPRAM NDKALKALAR KAVVEFATEV KNKERHP
|
| Detection Method: | |
| Confidence: | 76.927757 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [501-633] |
1 11 21 31 41 51
| | | | | |
1 LSKEEIIRST KEKYKFMGPD EIEAQKKKDK KSGVVKQAKV IMEVKGSTAG RSRGYGFVEF 60
61 RDHKNALMGL RWLNCHAVTS DEILEGLNDD EKKQVDNDLG KGRRLCVEFA IENSNVVKRR 120
121 REQLKQARTK RTR
|
| Detection Method: | |
| Confidence: | 93.232149 |
| Match: | 1po6A |
| Description: | Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [634-685] |
1 11 21 31 41 51
| | | | | |
1 PDNEDTGDVG ESENKKPKKE EATTPTNPDD KKMGDDIKRI IGFKRKRKHA KK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.271 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
| View | Download | 0.233 | d.48.1 | RecA protein, C-terminal domain |
| View | Download | 0.232 | a.159.2 | FF domain |
| View | Download | 0.215 | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
| View | Download | 0.215 | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
