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View Structure Prediction Details

Protein: RMI1
Organism: Saccharomyces cerevisiae
Length: 241 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RMI1.

Description E-value Query
Range
Subject
Range
gi|207340462 - gi|207340462|gb|EDZ68800.1| YPL024Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|190407922 - gi|190407922|gb|EDV11187.1| hypothetical protein SCRG_02466 [Saccharomyces cerevisiae RM11-1a]
RMI1 - Subunit of the RecQ (Sgs1p) - Topo III (Top3p) complex; stimulates superhelical relaxing and ssDNA b...
gi|151942768 - gi|151942768|gb|EDN61114.1| conserved protein [Saccharomyces cerevisiae YJM789]
RMI1_YEAST - RecQ-mediated genome instability protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ...
0.0 [1..241] [1..241]
RMI1_SCHPO - RecQ-mediated genome instability protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN...
rmi1 - RecQ mediated genome instability protein Rmi1
0.003 [43..227] [62..234]

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Predicted Domain #1
Region A:
Residues: [1-241]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFSSILSQD ITDDITPPAY SATLGSREQI VFRAYQNEPW LAGTASNLIL DKKLVIVDRE  60
   61 LLFQVLMVEN ITKSKLTQID DIKTKLDPKK QKVDRLRSGA QGNGAKKYEV ITQVDMEDDG 120
  121 NVADNNCAKE NNSNNNSSAA KNKAVFKLTL QSKSGDVFFA INSTPISWSS CMLGSKIVIL 180
  181 PGTVFNRGVF ILKDSQVIFL GGINRVWNEN RDQKFCDYLE SKLQRDKQLV NGGSKKRKAN 240
  241 D

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle