| Protein: | VTC3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 835 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VTC3.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [1..835] | [1..835] |
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0.0 | [1..813] | [1..783] |
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0.0 | [1..802] | [1..772] |
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0.0 | [1..807] | [1..722] |
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0.0 | [242..835] | [1..585] |
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Region A: Residues: [1-179] |
1 11 21 31 41 51
| | | | | |
1 MLFGIKLAND VYPPWKDSYI DYERLKKLLK ESVIHDGRSS VDSWSERNES DFVEALDKEL 60
61 EKVYTFQISK YNAVLRKLDD LEENTKSAEK IQKINSEQFK NTLEECLDEA QRLDNFDRLN 120
121 FTGFIKIVKK HDKLHPNYPS VKSLLQVRLK ELPFNNSEEY SPLLYRISYL YEFLRSNYD
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| Detection Method: |  |
| Confidence: | 53.443697 |
| Match: | PF03105 |
| Description: | SPX domain |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [180-254] |
1 11 21 31 41 51
| | | | | |
1 HPNTVSKSLA STSKLSHFSN LEDASFKSYK FWVHDDNIME VKARILRHLP ALVYASVPNE 60
61 NDDFVDNLES DVRVQ
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.648 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.793 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.793 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.713 | d.9.2 | Description not found. |
| View | Download | 0.713 | d.9.2 | Description not found. |
| View | Download | 0.648 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.629 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.629 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.612 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.594 | b.122.1 | PUA domain-like |
| View | Download | 0.546 | d.9.1 | Interleukin 8-like chemokines |
| View | Download | 0.541 | d.9.1 | Interleukin 8-like chemokines |
| View | Download | 0.501 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.501 | d.93.1 | SH2 domain |
| View | Download | 0.446 | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.444 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.436 | a.64.1 | Saposin |
| View | Download | 0.410 | a.22.1 | Histone-fold |
| View | Download | 0.409 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.343 | d.9.2 | Description not found. |
| View | Download | 0.332 | b.34.5 | Translation proteins SH3-like domain |
| View | Download | 0.327 | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.324 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.320 | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.312 | d.105.1 | Clathrin adaptor appendage, alpha and beta chain-specific domain |
| View | Download | 0.311 | c.47.1 | Thioredoxin-like |
| View | Download | 0.301 | d.129.2 | Phosphoglucomutase, C-terminal domain |
| View | Download | 0.298 | g.5.1 | Midkine |
| View | Download | 0.294 | b.34.5 | Translation proteins SH3-like domain |
| View | Download | 0.264 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.258 | d.17.1 | Cystatin/monellin |
| View | Download | 0.258 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.253 | b.1.2 | Fibronectin type III |
| View | Download | 0.242 | b.1.1 | Immunoglobulin |
| View | Download | 0.238 | d.110.4 | SNARE-like |
| View | Download | 0.236 | a.3.1 | Cytochrome c |
| View | Download | 0.235 | b.84.2 | Rudiment single hybrid motif |
| View | Download | 0.225 | c.102.1 | Cell-division inhibitor MinC, N-terminal domain |
| View | Download | 0.223 | b.55.1 | PH domain-like |
| View | Download | 0.217 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.213 | d.200.1 | Integrin beta tail domain |
| View | Download | 0.208 | b.55.1 | PH domain-like |
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Region A: Residues: [255-552] |
1 11 21 31 41 51
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1 PEARLNIGSK SNSLSSDGNS NQDVEIGKSK SVIFPQSYDP TITTLYFDND FFDLYNNRLL 60
61 KISGAPTLRL RWIGKLLDKP DIFLEKRTFT ENTETGNSSF EEIRLQMKAK FINNFIFKND 120
121 PSYKNYLINQ LRERGTQKEE LEKLSRDFDN IQNFIVEEKL QPVLRATYNR TAFQIPGDQS 180
181 IRVTIDSNIM YIREDSLDKN RPIRNPENWH RDDIDSNIPN PLRFLRAGEY SKFPYSVMEI 240
241 KVINQDNSQM PNYEWIKDLT NSHLVNEVPK FSLYLQGVAS LFGEDDKYVN ILPFWLPD
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| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [553-659] |
1 11 21 31 41 51
| | | | | |
1 LETDIRKNPQ EAYEEEKKTL QKQKSIHDKL DNMRRLSKIS VPDGKTTERQ GQKDQNTRHV 60
61 IADLEDHESS DEEGTALPKK SAVKKGKKFK TNAAFLKILA GKNISEN
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.393 | a.7.7 | BAG domain |
| View | Download | 0.506 | a.130.1 | Chorismate mutase II |
| View | Download | 0.516 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.360 | a.145.1 | Flagellar transcriptional activator FlhD |
| View | Download | 0.516 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.506 | a.130.1 | Chorismate mutase II |
| View | Download | 0.393 | a.7.7 | BAG domain |
| View | Download | 0.387 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.387 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.360 | a.145.1 | Flagellar transcriptional activator FlhD |
| View | Download | 0.347 | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.317 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.308 | i.11.1 | Computational models partly based on NMR data |
| View | Download | 0.306 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.305 | d.82.2 | Frataxin-like |
| View | Download | 0.287 | c.78.2 | Aspartate/glutamate racemase |
| View | Download | 0.266 | a.143.1 | RNA polymerase omega subunit |
| View | Download | 0.265 | a.24.3 | Cytochromes |
| View | Download | 0.257 | a.74.1 | Cyclin-like |
| View | Download | 0.254 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.247 | c.5.1 | MurCD N-terminal domain |
| View | Download | 0.245 | a.1.1 | Globin-like |
| View | Download | 0.240 | c.23.1 | CheY-like |
| View | Download | 0.223 | a.2.1 | GreA transcript cleavage protein, N-terminal domain |
| View | Download | 0.220 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.220 | c.23.16 | Class I glutamine amidotransferase-like |
| View | Download | 0.219 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.213 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.206 | a.4.5 | "Winged helix" DNA-binding domain |
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Region A: Residues: [660-835] |
1 11 21 31 41 51
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1 GNDPYSDDTD SASSFQLPPG VKKPVHLLKN AGPVKVEAKV WLANERTFNR WLSVTTLLSV 60
61 LTFSIYNSVQ KAEFPQLADL LAYVYFFLTL FCGVWAYRTY LKRLTLIKGR SGKHLDAPVG 120
121 PILVAVVLIV TLVVNFSVAF KEAARRERGL VNVSSQPSLP RTLKPIQDFI FNLVGE
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| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
