| Protein: | SWI1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1314 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SWI1.
| Description | E-value | Query Range |
Subject Range |
|
|
7.0E-46 | [3..439] | [489..925] |
|
|
1.0E-29 | [2..448] | [16..502] |
|
Region A: Residues: [1-405] |
1 11 21 31 41 51
| | | | | |
1 MDFFNLNNNN NNNNTTTTTT TTNNNNTNNN NTNNNNNPAN NTNNNNSTGH SSNTNNNTNN 60
61 NNTNTGASGV DDFQNFFDPK PFDQNLDSNN NNSNSNNNDN NNSNTVASST NFTSPTAVVN 120
121 NAAPANVTGG KAANFIQNQS PQFNSPYDSN NSNTNLNSLS PQAILAKNSI IDSSNLPLQA 180
181 QQQLYGGNNN NNSTGIANDN VITPHFITNV QSISQNSSSS TPNTNSNSTP NANQQFLPFN 240
241 NSASNNGNLT SNQLISNYAA SNSMDRSSSA SNEFVPNTSD NNNNSNNHNM RNNSNNKTSN 300
301 NNNVTAVPAA TPANTNNSTS NANTVFSERA AMFAALQQKQ QQRFQALQQQ QQQQQNQQQQ 360
361 NQQPQQQQQQ QQNPKFLQSQ RQQQQRSILQ SLNPALQEKI STELN
|
| Detection Method: |  |
| Confidence: | 8.154902 |
| Match: | 1epwA_ |
| Description: | Botulinum neurotoxin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [406-548] |
1 11 21 31 41 51
| | | | | |
1 NKQYELFMKS LIENCKKRNM PLQSIPEIGN RKINLFYLYM LVQKFGGADQ VTRTQQWSMV 60
61 AQRLQISDYQ QLESIYFRIL LPYERHMISQ EGIKETQAKR IFLQQFLQEL LKKVQQQQQA 120
121 AALANANNNI NSASSAPTPA APG
|
| Detection Method: | |
| Confidence: | 547.69897 |
| Match: | 1kkxA_ |
| Description: | Transcription regulator Adr6 (Swi1) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.278956919805523 | bayes_pls_golite062009 |
|
Region A: Residues: [549-908] |
1 11 21 31 41 51
| | | | | |
1 ASVPATAAPG TEAGIVPVSA NTPKSLNSNI NINVNNNNIG QQQVKKPRKQ RVKKKTKKEL 60
61 ELERKEREDF QKRQQKLLED QQRQQKLLLE TKLRQQYEIE LKKLPKVYKR SIVRNYKPLI 120
121 NRLKHYNGYD INYISKIGEK IDSNKPIFLF APELGAINLH ALSMSLQSKN LGEINTALNT 180
181 LLVTSADSNL KISLVKYPEL LDSLAILGMN LLSNLSQNVV PYHRNTSDYY YEDAGSNQYY 240
241 VTQHDKMVDK IFEKVNNNAT LTPNDSNDEK VTILVDSLTG NQLPTPTPTE MEPDLDTECF 300
301 ISMQSTSPAV KQWDLLPEPI RFLPNQFPLK IHRTPYLTSL KKIKDEIDDP FTKINTRGAE 360
361
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [909-1066] |
1 11 21 31 41 51
| | | | | |
1 DPKVLINDQL STISMILRNI SFSDNNSRIM SRNFYLKRFI SDLLWLVLIH PENFTCNRKI 60
61 LNFKKDLVIV LSNISHLLEI ASSIDCLLIL ILVISFGQPK LNPMASSSSF GSESLTFNEF 120
121 QLQWGKYQTF GVDILAKLFS LEKPNLNYFK SILLNKNT
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1067-1314] |
1 11 21 31 41 51
| | | | | |
1 GNNLYDRNSN NNHKDKKLLR RLLNLYNDNN KNNNNRHNLL NDVVSFLFSA IPLQQVLSQS 60
61 ADPSLLIDQF SPVISQSLTS ILVIVQKILP LSNEVFEISE NNSDSNSNNN GNKDSSFNFN 120
121 KNLPFVWLSS EENIGSGLLK LSEIILNINN STSKNTLLQQ QNYSKVLLPS INISCVQLIK 180
181 CLVEKSICFE NCLNNDPEIL KKIASIPNLF PTDLEIFQLF TNPSVDIQII NQYQLLYNLK 240
241 NDILTNLE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
