YRC Public Data Repository - Protein Structure Prediction

Protein:	LSP1
Organism:	Saccharomyces cerevisiae
Length:	341 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LSP1.

Description	E-value	Query Range	Subject Range
gi\|207340442 - gi\|207340442\|gb\|EDZ68790.1\| YPL004Cp-like protein [Saccharomyces cerevisiae AWRI1631] LSP1_YEAST - Sphingolipid long chain base-responsive protein LSP1 OS=Saccharomyces cerevisiae (strain ATCC 204508... gi\|190407941 - gi\|190407941\|gb\|EDV11206.1\| sphingolipid long chain base-responsive protein LSP1 [Saccharomyces cere... LSP1 - Primary component of eisosomes, which are large immobile patch structures at the cell cortex associa...	0.0	[1..341]	[1..341]
gi\|28926843, gi\|... - gi\|32414603\|ref\|XP_327781.1\| hypothetical protein [Neurospora crassa], gi\|28926843\|gb\|EAA35806.1\| sp... gi\|85116372 - gi\|85116372\|ref\|XP_965042.1\| sphingolipid long chain base-responsive protein LSP1 [Neurospora crassa...	0.0	[1..330]	[1..355]
PIL1_SCHPO - Probable sphingolipid long chain base-responsive protein pil1 OS=Schizosaccharomyces pombe (strain 9... SPCC736.15 - protein kinase inhibitor	0.0	[1..321]	[2..319]

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Predicted Domain #1

Region A:
Residues: [1-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRTYSLRNQ RAPTAAELQA PPPPPSSTKS KFFGKASIAS SFRKNAAGNF GPELARKLSQ  60
   61 LVKTEKGVLR AMEVVASERR EAAKQLSLWG ADNDDDVSDV TDKLGVLIYE LGELQDQFID 120
  121 KYDQYRVTLK SIRNIEASVQ PSRDRKEKIT DEIAHLKYKD PQSTKIPVLE QELVRAEAES 180
  181 LVAEAQLSNI TREKLKAAYS YMFDSLRELS EKFALIAGYG KALLELLDDS PVTPGEARPA 240
  241 YDGYEASRQI IMDAESALES WTLDMAAVKP TLSFHQTVDD VY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [283-341]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDEDGEEEEE PEIQNGDIPG QVVEEEEVEW TTEVPVDDEA HEADHHVSQN GHTSGSENI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits