| Protein: | LSP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 341 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LSP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..341] | [1..341] |
|
|
0.0 | [1..330] | [1..355] |
|
|
0.0 | [1..321] | [2..319] |
|
Region A: Residues: [1-282] |
1 11 21 31 41 51
| | | | | |
1 MHRTYSLRNQ RAPTAAELQA PPPPPSSTKS KFFGKASIAS SFRKNAAGNF GPELARKLSQ 60
61 LVKTEKGVLR AMEVVASERR EAAKQLSLWG ADNDDDVSDV TDKLGVLIYE LGELQDQFID 120
121 KYDQYRVTLK SIRNIEASVQ PSRDRKEKIT DEIAHLKYKD PQSTKIPVLE QELVRAEAES 180
181 LVAEAQLSNI TREKLKAAYS YMFDSLRELS EKFALIAGYG KALLELLDDS PVTPGEARPA 240
241 YDGYEASRQI IMDAESALES WTLDMAAVKP TLSFHQTVDD VY
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [283-341] |
1 11 21 31 41 51
| | | | | |
1 EDEDGEEEEE PEIQNGDIPG QVVEEEEVEW TTEVPVDDEA HEADHHVSQN GHTSGSENI
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.243 | a.4.1 | Homeodomain-like |
| View | Download | 0.288 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.329 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.229 | a.4.1 | Homeodomain-like |
