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View Structure Prediction Details

Protein: NUD1
Organism: Saccharomyces cerevisiae
Length: 851 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUD1.

Description E-value Query
Range
Subject
Range
gi|34901854, gi|... - gi|34901854|ref|NP_912273.1| putative receptor protein kinase [Oryza sativa (japonica cultivar-group...
2.0E-73 [18..828] [80..844]
GSO1_ARATH - LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1
7.0E-58 [11..845] [3..828]

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Predicted Domain #1
Region A:
Residues: [1-90]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDMDTQEAEL SSQLENLTIN SPRKLRSNAH SNSGKVFKEY ESNHDFQDSN FTSQVVEPAI  60
   61 SDSVKKPPTM TVLNNYSTVH QKVPSGFSGT 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [91-148]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TATSHQEAQW KQYFPGIGSG GGTNFGGAVG TANKVPESDL IVSDLVKDLS GVLETNTF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.0
Match: 1ds9A_
Description: Outer arm dynein light chain 1
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [149-400]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRHLDMKNKT TTMQTHENHD TISISHSKDF FNAEKVSSSF SDDSDSGPAA EAHDVFDGIL  60
   61 QKQKSNYLVG SYPSNSNNKN NNNNNNNNNN NSININNKDN ARTKEEDEED TSNSFEFSSS 120
  121 SSMSSSQTQS GRKSKVLKKP PLNTISPGQL GYQFNHTHGA WDPPLNQGLD VSSSHSLDNT 180
  181 SSNQSQFATM VPTGDNHTNG KAPSILDKKA YELTSTKPGD VGYRQKKIQE EENLANSDDT 240
  241 PLDTPKFNDL FT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.522879
Match: 1m9sA_
Description: Internalin B; Internalin B, C-terminal domains
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [401-464]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNGTRAKVKG QMRTSRSISN SNLLEAHKKL KTFPAERVED ITSISEVNTS FNETEKQLIS  60
   61 ILTS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.682 0.919 spindle pole body a.39.1 EF-hand

Predicted Domain #5
Region A:
Residues: [465-851]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLSGSPSYDS DWEKILKVDL SRGKLKNMFG MQRLLPNVLV LNLSDNEMNT LEGIPSNVVQ  60
   61 LFCSNNKITS AHCSLAGFHD LECLDLSYNL LNTSLKFLSL CHHLQEVNLS YNSIQSLEGI 120
  121 GSSRMKKLNL SNNEINGIID FEQLILTNNS VVGGWLTVEV LDLSNNNIIG VRNINCLPRL 180
  181 KVLNLNGNPL VSIVESSKME NGTLRALSIK NTGGALSKLQ NYKLDDQFTF PYQNLKILKL 240
  241 DGFAQLSKWQ KWPATLQILE INGGLASSLP RFSSLKSTNL YSLTIANVRD FTHLPVDLSK 300
  301 ELPFLQELHL PGNNLQNAHK LTKTLPRQSV KFLDLRNNPI TTPRHDRAST SLHYRQLLQL 360
  361 AGLCQQQCPA LATLWLDDTP APTATNL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.0
Match: 1o6sA_
Description: Internalin A
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle