| Protein: | NUD1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 851 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUD1.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-73 | [18..828] | [80..844] |
|
|
7.0E-58 | [11..845] | [3..828] |
|
Region A: Residues: [1-90] |
1 11 21 31 41 51
| | | | | |
1 MDMDTQEAEL SSQLENLTIN SPRKLRSNAH SNSGKVFKEY ESNHDFQDSN FTSQVVEPAI 60
61 SDSVKKPPTM TVLNNYSTVH QKVPSGFSGT
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [91-148] |
1 11 21 31 41 51
| | | | | |
1 TATSHQEAQW KQYFPGIGSG GGTNFGGAVG TANKVPESDL IVSDLVKDLS GVLETNTF
|
| Detection Method: | |
| Confidence: | 9.0 |
| Match: | 1ds9A_ |
| Description: | Outer arm dynein light chain 1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [149-400] |
1 11 21 31 41 51
| | | | | |
1 KRHLDMKNKT TTMQTHENHD TISISHSKDF FNAEKVSSSF SDDSDSGPAA EAHDVFDGIL 60
61 QKQKSNYLVG SYPSNSNNKN NNNNNNNNNN NSININNKDN ARTKEEDEED TSNSFEFSSS 120
121 SSMSSSQTQS GRKSKVLKKP PLNTISPGQL GYQFNHTHGA WDPPLNQGLD VSSSHSLDNT 180
181 SSNQSQFATM VPTGDNHTNG KAPSILDKKA YELTSTKPGD VGYRQKKIQE EENLANSDDT 240
241 PLDTPKFNDL FT
|
| Detection Method: | |
| Confidence: | 16.522879 |
| Match: | 1m9sA_ |
| Description: | Internalin B; Internalin B, C-terminal domains |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [401-464] |
1 11 21 31 41 51
| | | | | |
1 KNGTRAKVKG QMRTSRSISN SNLLEAHKKL KTFPAERVED ITSISEVNTS FNETEKQLIS 60
61 ILTS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.682 | 0.919 | spindle pole body | a.39.1 | EF-hand |
|
Region A: Residues: [465-851] |
1 11 21 31 41 51
| | | | | |
1 KLSGSPSYDS DWEKILKVDL SRGKLKNMFG MQRLLPNVLV LNLSDNEMNT LEGIPSNVVQ 60
61 LFCSNNKITS AHCSLAGFHD LECLDLSYNL LNTSLKFLSL CHHLQEVNLS YNSIQSLEGI 120
121 GSSRMKKLNL SNNEINGIID FEQLILTNNS VVGGWLTVEV LDLSNNNIIG VRNINCLPRL 180
181 KVLNLNGNPL VSIVESSKME NGTLRALSIK NTGGALSKLQ NYKLDDQFTF PYQNLKILKL 240
241 DGFAQLSKWQ KWPATLQILE INGGLASSLP RFSSLKSTNL YSLTIANVRD FTHLPVDLSK 300
301 ELPFLQELHL PGNNLQNAHK LTKTLPRQSV KFLDLRNNPI TTPRHDRAST SLHYRQLLQL 360
361 AGLCQQQCPA LATLWLDDTP APTATNL
|
| Detection Method: | |
| Confidence: | 27.0 |
| Match: | 1o6sA_ |
| Description: | Internalin A |
Matching Structure (courtesy of the PDB): |
|
