| Protein: | NUD1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 851 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUD1.
| Description | E-value | Query Range |
Subject Range |
|
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2.0E-73 | [18..828] | [80..844] |
|
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7.0E-58 | [11..845] | [3..828] |
|
Region A: Residues: [1-90] |
1 11 21 31 41 51
| | | | | |
1 MDMDTQEAEL SSQLENLTIN SPRKLRSNAH SNSGKVFKEY ESNHDFQDSN FTSQVVEPAI 60
61 SDSVKKPPTM TVLNNYSTVH QKVPSGFSGT
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.431 | a.28.1 | ACP-like |
| View | Download | 0.233 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.271 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.243 | a.85.1 | Hemocyanin, N-terminal domain |
| View | Download | 0.340 | a.112.1 | Description not found. |
| View | Download | 0.213 | a.118.8 | TPR-like |
| View | Download | 0.201 | a.158.1 | F-box domain |
|
Region A: Residues: [91-148] |
1 11 21 31 41 51
| | | | | |
1 TATSHQEAQW KQYFPGIGSG GGTNFGGAVG TANKVPESDL IVSDLVKDLS GVLETNTF
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| Detection Method: | |
| Confidence: | 9.0 |
| Match: | 1ds9A_ |
| Description: | Outer arm dynein light chain 1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [149-400] |
1 11 21 31 41 51
| | | | | |
1 KRHLDMKNKT TTMQTHENHD TISISHSKDF FNAEKVSSSF SDDSDSGPAA EAHDVFDGIL 60
61 QKQKSNYLVG SYPSNSNNKN NNNNNNNNNN NSININNKDN ARTKEEDEED TSNSFEFSSS 120
121 SSMSSSQTQS GRKSKVLKKP PLNTISPGQL GYQFNHTHGA WDPPLNQGLD VSSSHSLDNT 180
181 SSNQSQFATM VPTGDNHTNG KAPSILDKKA YELTSTKPGD VGYRQKKIQE EENLANSDDT 240
241 PLDTPKFNDL FT
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| Detection Method: | |
| Confidence: | 16.522879 |
| Match: | 1m9sA_ |
| Description: | Internalin B; Internalin B, C-terminal domains |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [401-464] |
1 11 21 31 41 51
| | | | | |
1 KNGTRAKVKG QMRTSRSISN SNLLEAHKKL KTFPAERVED ITSISEVNTS FNETEKQLIS 60
61 ILTS
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.682 | 0.919 | spindle pole body | a.39.1 | EF-hand |
| View | Download | 0.653 | 0.919 | spindle pole body | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.398 | 0.919 | spindle pole body | a.60.1 | SAM/Pointed domain |
| View | Download | 0.412 | 0.919 | spindle pole body | a.64.1 | Saposin |
| View | Download | 0.406 | 0.919 | spindle pole body | a.57.1 | Protein HNS-dependent expression A; HdeA |
| View | Download | 0.355 | 0.919 | spindle pole body | a.77.1 | DEATH domain |
| View | Download | 0.352 | 0.919 | spindle pole body | a.17.1 | p8-MTCP1 |
| View | Download | 0.312 | 0.919 | spindle pole body | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.309 | 0.919 | spindle pole body | a.5.3 | N-terminal domain of phosphatidylinositol transfer protein sec14p |
| View | Download | 0.304 | 0.919 | spindle pole body | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.300 | 0.919 | spindle pole body | a.64.1 | Saposin |
| View | Download | 0.298 | 0.919 | spindle pole body | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.294 | 0.919 | spindle pole body | a.60.1 | SAM/Pointed domain |
| View | Download | 0.280 | 0.919 | spindle pole body | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.263 | 0.919 | spindle pole body | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.258 | 0.919 | spindle pole body | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.245 | 0.919 | spindle pole body | a.39.1 | EF-hand |
| View | Download | 0.243 | 0.919 | spindle pole body | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.242 | 0.919 | spindle pole body | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.242 | 0.919 | spindle pole body | a.5.2 | UBA-like |
| View | Download | 0.237 | 0.919 | spindle pole body | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.216 | 0.919 | spindle pole body | a.3.1 | Cytochrome c |
| View | Download | 0.213 | 0.919 | spindle pole body | a.134.1 | Fungal elicitin |
| View | Download | 0.209 | 0.919 | spindle pole body | a.5.2 | UBA-like |
| View | Download | 0.207 | 0.919 | spindle pole body | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.204 | 0.919 | spindle pole body | d.175.1 | Penicillin binding protein dimerisation domain |
|
Region A: Residues: [465-851] |
1 11 21 31 41 51
| | | | | |
1 KLSGSPSYDS DWEKILKVDL SRGKLKNMFG MQRLLPNVLV LNLSDNEMNT LEGIPSNVVQ 60
61 LFCSNNKITS AHCSLAGFHD LECLDLSYNL LNTSLKFLSL CHHLQEVNLS YNSIQSLEGI 120
121 GSSRMKKLNL SNNEINGIID FEQLILTNNS VVGGWLTVEV LDLSNNNIIG VRNINCLPRL 180
181 KVLNLNGNPL VSIVESSKME NGTLRALSIK NTGGALSKLQ NYKLDDQFTF PYQNLKILKL 240
241 DGFAQLSKWQ KWPATLQILE INGGLASSLP RFSSLKSTNL YSLTIANVRD FTHLPVDLSK 300
301 ELPFLQELHL PGNNLQNAHK LTKTLPRQSV KFLDLRNNPI TTPRHDRAST SLHYRQLLQL 360
361 AGLCQQQCPA LATLWLDDTP APTATNL
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| Detection Method: | |
| Confidence: | 27.0 |
| Match: | 1o6sA_ |
| Description: | Internalin A |
Matching Structure (courtesy of the PDB): |
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